BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0217500 Os01g0217500|AK063270
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0217500 DJ-1 family protein 662 0.0
Os01g0217800 DJ-1 family protein 347 7e-96
Os06g0531200 DJ-1 family protein 306 2e-83
Os05g0519600 Similar to 4-methyl-5(B-hydroxyethyl)-thiazol ... 66 6e-11
>Os01g0217500 DJ-1 family protein
Length = 395
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/395 (85%), Positives = 339/395 (85%)
Query: 1 MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIV 60
MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIV
Sbjct: 1 MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIV 60
Query: 61 ADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXX 120
ADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLY
Sbjct: 61 ADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLA 120
Query: 121 XXSWGMLNGLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLY 180
SWGMLNGLKATAHPLFVDKFPPE TSRGPATSTEFALALVEQLY
Sbjct: 121 LASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAVTSRGPATSTEFALALVEQLY 180
Query: 181 SKNKAEQIAKEMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXXXX 240
SKNKAEQIAKEMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITII
Sbjct: 181 SKNKAEQIAKEMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIDVLRR 240
Query: 241 XXXXXXXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTMSS 300
ENAGVEIVARHGMRIV SSFDLIILPGGTPGAKTMSS
Sbjct: 241 ADADVVVASAENAGVEIVARHGMRIVADTTLDEAAADDQTSSFDLIILPGGTPGAKTMSS 300
Query: 301 NEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKAADQDGGDECESRVVVDGNVI 360
NEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKAADQDGGDECESRVVVDGNVI
Sbjct: 301 NEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKAADQDGGDECESRVVVDGNVI 360
Query: 361 TSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLFA 395
TSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLFA
Sbjct: 361 TSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLFA 395
>Os01g0217800 DJ-1 family protein
Length = 428
Score = 347 bits (891), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 196/401 (48%), Positives = 246/401 (61%), Gaps = 25/401 (6%)
Query: 10 KKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASAD----DGELVVEVMYGVRIVADALV 65
K+VLVP+ GTEPVEAA DVL RAGA VTVA+AD D L+VE +GV++VAD V
Sbjct: 36 KRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRV 95
Query: 66 AGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSWG 125
A D FDLI LPGG+PG+ANL C LE MV++ A GGLY WG
Sbjct: 96 A--DLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWG 153
Query: 126 MLNGLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLYSKNKA 185
+L GLKAT +P F++KF E TS+GPAT+ E+ALALVEQLY K K+
Sbjct: 154 LLKGLKATCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALALVEQLYGKEKS 213
Query: 186 EQIAKEMLVRYDAG--YTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXXXXXXX 243
E++A + VR G Y IDE NSV+WKC+GTP+VLVPVANG+EEME + +I
Sbjct: 214 EEVAGPLYVRPQPGVDYVIDEFNSVEWKCSGTPQVLVPVANGSEEMEALNLIDILRRAGA 273
Query: 244 XXXXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTMSSNEK 303
E+ + RH ++ FDLI++PGG PGA+ +SS +
Sbjct: 274 NVTVASVEDKLQVVTRRHKFNLI----ADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKV 329
Query: 304 LVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKA----------ADQDGGDECESRV 353
LV LLKKQA ++KPYGAI A+ A+VLEPHGLL+GKKA DQ C+SRV
Sbjct: 330 LVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSA---CDSRV 386
Query: 354 VVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLF 394
VVDGN+ITS G+A EFA+A VEKL GR+ A +A+ L+F
Sbjct: 387 VVDGNLITSKAPGSATEFALAIVEKLFGREKAVSIAKELIF 427
>Os06g0531200 DJ-1 family protein
Length = 394
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 188/399 (47%), Positives = 247/399 (61%), Gaps = 16/399 (4%)
Query: 5 ASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADAL 64
ASPP KKVLVPI +GTEP+EA + +DVLRRAGADV+VAS D G V +GV++ ADAL
Sbjct: 2 ASPPAKKVLVPIASGTEPMEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAADAL 61
Query: 65 VAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSW 124
+ A A FDLI LPGG+PG++NL C LE MV++HA G LY SW
Sbjct: 62 LDDL--ADAEFDLISLPGGMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSW 119
Query: 125 GMLNGLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLYSKNK 184
G+LNGLKAT +P F+DK P E TSRGP T+ E+++ LVEQLY K K
Sbjct: 120 GLLNGLKATCYPSFMDKLPSEVNAVESRVQIDGNCVTSRGPGTAMEYSVVLVEQLYGKEK 179
Query: 185 AEQIAKEMLVRYDAG--YTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXXXXXX 242
A+++A M++R G +++ E+NS W TP++LVP+ANGTEEME II
Sbjct: 180 ADEVAGPMVMRPQHGVEFSLKELNSTSWNVGETPQILVPIANGTEEMEATMIIDILRRAK 239
Query: 243 XXXXXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTMSSNE 302
E +EIVA +++V +DLI+LPGG GA+ + ++
Sbjct: 240 ANVVVASLEET-LEIVASRKVKMV----ADVLLDDALKQQYDLILLPGGLGGAQAYAKSD 294
Query: 303 KLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKAADQDG-------GDECESRVVV 355
KL+ L+KKQA A+K YGAI A+ A LEPHGLL+GKKA G EC++RVVV
Sbjct: 295 KLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKATSFPGMWNKLSDQSECKNRVVV 354
Query: 356 DGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLF 394
DGN+ITS G GT+MEF++A VEKL GR+ A +A+ ++F
Sbjct: 355 DGNLITSQGPGTSMEFSLAIVEKLFGRERAVELAKTMVF 393
>Os05g0519600 Similar to 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate
biosynthesis enzyme
Length = 238
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 10 KKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGGD 69
KKVL+PI GTE +EA + VLRRAGADVT+AS +DG L VE G IVAD +A
Sbjct: 67 KKVLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDG-LEVEASRGSHIVADKRIAA-- 123
Query: 70 CAAAHFDLIVLP 81
CA FDL+ LP
Sbjct: 124 CADQVFDLVALP 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,192,465
Number of extensions: 482217
Number of successful extensions: 1303
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 4
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)