BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0203000 Os01g0203000|AK067471
(365 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0203000 BZR1, transcriptional repressor family protein 521 e-148
Os06g0552300 BZR1, transcriptional repressor family protein 308 3e-84
Os02g0233200 BZR1, transcriptional repressor family protein 170 1e-42
Os07g0580500 BZR1, transcriptional repressor family protein 107 1e-23
>Os01g0203000 BZR1, transcriptional repressor family protein
Length = 365
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/335 (79%), Positives = 267/335 (79%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
RMPTW FAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP
Sbjct: 31 RMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHPN 150
DGTTYRKGYKPPERMEVIGC R FLPHPN
Sbjct: 91 DGTTYRKGYKPPERMEVIGCSVSPSPCSSYQPSPRASYNASPTSSSFPSGASSPFLPHPN 150
Query: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKT 210
NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKT
Sbjct: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKT 210
Query: 211 DWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQIXXXXXXXXXXXXXXXNP 270
DWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQI NP
Sbjct: 211 DWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQISSTSPSSPTFSLVSSNP 270
Query: 271 FSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTNGGHQ 330
FSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTNGGHQ
Sbjct: 271 FSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTNGGHQ 330
Query: 331 AAGLVRAWEGERIHEDSGSDDLELTLGSSRTRAAA 365
AAGLVRAWEGERIHEDSGSDDLELTLGSSRTRAAA
Sbjct: 331 AAGLVRAWEGERIHEDSGSDDLELTLGSSRTRAAA 365
>Os06g0552300 BZR1, transcriptional repressor family protein
Length = 355
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 172/339 (50%), Positives = 211/339 (62%), Gaps = 10/339 (2%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R+PTW +AGLRA+G Y LPKHCDNNEVLKALCNEAGW VEP
Sbjct: 18 RVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEP 77
Query: 91 DGTTYRKGYKPP--ERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLP- 147
DGTTYRKG KPP ER + IG R +
Sbjct: 78 DGTTYRKGCKPPQAERPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSSSHITI 137
Query: 148 HPNNMANGVDGNPILPWLKTL---SNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTAR 204
N++ GV+G+ ++PWLKTL S+ SS K PQL L +GGSISAPVTPP SSPT R
Sbjct: 138 GGNSLIGGVEGSSLIPWLKTLPLSSSYASSSKFPQLHHLYFNGGSISAPVTPPSSSPT-R 196
Query: 205 TPRMKTDWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQIXXXXXXXXXXX 264
TPR++TDW+ ++VQP W +N + NSTPPSPG + PDPAWL+G QI
Sbjct: 197 TPRLRTDWENASVQPPWASANYTSLPNSTPPSPGHKIAPDPAWLSGFQISSAGPSSPTYN 256
Query: 265 XXXXNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSS 324
NPF +FK+AI ++SR+CTPGQSGTCSP + GM H D+ M+D D+FAFGSS
Sbjct: 257 LVSPNPFGIFKEAIA---STSRVCTPGQSGTCSPVMGGMPAHHDVQMVDGAPDDFAFGSS 313
Query: 325 TNGGHQAAGLVRAWEGERIHEDSGSDDLELTLGSSRTRA 363
+NG +++ GLV+AWEGERIHE+ SD+LELTLGSS+TRA
Sbjct: 314 SNGNNESPGLVKAWEGERIHEECASDELELTLGSSKTRA 352
>Os02g0233200 BZR1, transcriptional repressor family protein
Length = 376
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 166/379 (43%), Gaps = 61/379 (16%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R+PTW +AGLRA+G Y LPKHCDNNEVLKALCNEAGW VEP
Sbjct: 9 RVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEP 68
Query: 91 DGTTYR--------------KGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXX 136
DGTTYR KG ME GC
Sbjct: 69 DGTTYRKYWSLDRIEAAHVKKGLVKEAIMETKGCKPPASELADQLGRSPSASPCSSYQPS 128
Query: 137 XXXXXXXXFLPHPNNMA----NGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIH-----G 187
+ + G +G+ ++PWLKTLS++ H G
Sbjct: 129 PRGTSSFPSSGSSSQITLGGGGGGEGSSLIPWLKTLSSAGVGIGGGSSSKFPAHYSYFGG 188
Query: 188 GSISAPVTPPLSSPTARTPRMKTD-WDE------SNVQPTWT-------GSNSPCVVNST 233
GSISAPVTPP SP RTPR+KT W+E +V P W + S + NST
Sbjct: 189 GSISAPVTPPSGSP-PRTPRLKTAAWEEYHHHHAGSVLPPWATVGASYAYAASSSLPNST 247
Query: 234 PPSPGRTMLPDPA----------WLAGIQIXXXXXXXXXXXXXXXNPFSVFKDAILVGNN 283
PPSP R + A WLAG QI P A G++
Sbjct: 248 PPSPRRKVAAAAAAAGGGNDAAAWLAGFQISSAGPSSPTYSLVAPPPNPFGAAAAAAGSS 307
Query: 284 SSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTNGGHQAAGLVRAWEGERI 343
S M SG CSP G D+ M DA EFAFG G + GLV+AWEGERI
Sbjct: 308 SRVM-----SGACSPVAGG-----DVQMADAARREFAFGGE---GGKMTGLVKAWEGERI 354
Query: 344 HEDSGSDDLELTLGSSRTR 362
HE+ GSDDLELTLGSS TR
Sbjct: 355 HEECGSDDLELTLGSSMTR 373
>Os07g0580500 BZR1, transcriptional repressor family protein
Length = 304
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 131/331 (39%), Gaps = 50/331 (15%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R PTW F GLRA G Y LPKHCDNNEVLKALC EAGWVVE
Sbjct: 16 RTPTWKERENNKRRERRRRAIAAKIFTGLRALGNYNLPKHCDNNEVLKALCREAGWVVED 75
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHPN 150
DGTTYRKG KPP G
Sbjct: 76 DGTTYRKGCKPPP--SSAGGASVGMSPCSSTQLLSAPSSSFPSPVPSYHASPASSSFPSP 133
Query: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTA-RTPRM- 208
+ + + +LP+L+ L P LPPL + S SAPVTPPLSSPTA R P++
Sbjct: 134 SRIDNPSASCLLPFLRGL---------PNLPPLRV---SSSAPVTPPLSSPTASRPPKIR 181
Query: 209 KTDWDESNVQPTWTGSNSPCVVNSTPPSPGR-TMLPDPAWLAGIQIXXXXXXXXXXXXXX 267
K DWD V P P S P SP R L P +
Sbjct: 182 KPDWD---VDPF----RHPFFAVSAPASPTRGRRLEHPDTIPECD-------ESDVSTVD 227
Query: 268 XNPFSVFKDAILVGNN-SSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTN 326
+ F+ A + + + PG S + S I G A EF F
Sbjct: 228 SGRWISFQMATTAPTSPTYNLVNPGASTSNSMEIEGTAGRGGA--------EFEFDK--- 276
Query: 327 GGHQAAGLVRAWEGERIHEDSGSDDLELTLG 357
G V WEGERIHE +++LELTLG
Sbjct: 277 ------GRVTPWEGERIHE-VAAEELELTLG 300
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,058,138
Number of extensions: 534392
Number of successful extensions: 1641
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1632
Number of HSP's successfully gapped: 6
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)