BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0196500 Os01g0196500|J100062J10
(201 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0196500 Prenylated rab acceptor PRA1 family protein 241 4e-64
Os05g0474400 Prenylated rab acceptor PRA1 family protein 78 4e-15
Os03g0798400 Prenylated rab acceptor PRA1 family protein 64 1e-10
>Os01g0196500 Prenylated rab acceptor PRA1 family protein
Length = 201
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 131/201 (65%)
Query: 1 MSKYGTIPTXXXXXXXXXXXXXXXXXXXXXXXXXDFFSRAKARGATALATRRPWRELADP 60
MSKYGTIPT DFFSRAKARGATALATRRPWRELADP
Sbjct: 1 MSKYGTIPTSSSSSSSGAAPPPLPLGGGGGASPLDFFSRAKARGATALATRRPWRELADP 60
Query: 61 HALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFLVCMVAWLVLY 120
HALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFLVCMVAWLVLY
Sbjct: 61 HALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFLVCMVAWLVLY 120
Query: 121 FLRDEPIVLFGRXXXXXXXXXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXXXXKA 180
FLRDEPIVLFGR N KA
Sbjct: 121 FLRDEPIVLFGRVVGDGAVLAALAAVTLVLLLLTGATANIVSSLLIGVLLVVLHAALHKA 180
Query: 181 EENVDDEVGRWYTPVPPQPAH 201
EENVDDEVGRWYTPVPPQPAH
Sbjct: 181 EENVDDEVGRWYTPVPPQPAH 201
>Os05g0474400 Prenylated rab acceptor PRA1 family protein
Length = 220
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 36 FFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVV 95
F S+ +L+ RRPW EL D A P SL+DA R+R NLA++ +NYA VV +
Sbjct: 43 FLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVVAFAL 102
Query: 96 FLSLLWHPASLIVFLVCMVAWLVLYFLR--DEPIVLFGR 132
SLL HP SL+V L + AW LY R D+P+VLFGR
Sbjct: 103 GASLLAHPFSLLVLLGLLAAWCFLYLFRGSDQPVVLFGR 141
>Os03g0798400 Prenylated rab acceptor PRA1 family protein
Length = 230
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 FFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVV 95
FFSRA+A A R WRE+ D A P S +A R R NLA++ NYA+ L +V
Sbjct: 57 FFSRARAVAGAAAGRPRAWREVLDATAFSRPESCGEARARARRNLAYFRANYALAALVLV 116
Query: 96 FLSLLWHPASLIVFLVCMVAWLVLYFLRDE---PIVLFGR 132
FL L++ P S++ FL AWL LYF R + P+ GR
Sbjct: 117 FLGLVYRPVSMLAFLALFAAWLGLYFGRGDGEPPLACMGR 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,647,946
Number of extensions: 129087
Number of successful extensions: 525
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 6
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)