Os01g0196500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os01g0196500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.07 | 0.244 | 9.19 | 1.28 | 0.699 | -0.044 | 0.195 | 2.75 | 0.155 | 7.06 | 17.95 | 3067 | -- | -- |
| 34.2 | 0.272 | 9.29 | 0.589 | 0.698 | -0.0805 | 0.174 | -- | -0.0174 | 7.04 | 17.94 | 10186 | -- | -- |
| 27.16 | 0.243 | 9.19 | 1.29 | 0.699 | -0.0491 | -- | 2.75 | 0.157 | 7.01 | 18 | 3051 | -- | -- |
| 32.85 | 0.267 | 9.33 | 0.264 | 0.69 | 0.273 | -- | -- | -0.193 | 7.07 | 27.21 | 47520 | -- | -- |
| 52.9 | 0.339 | 9.21 | 1.29 | -- | -0.034 | -- | 2.72 | 0.164 | -- | 18.3 | 3022 | -- | -- |
| 34.36 | 0.275 | 9.3 | 0.518 | 0.706 | -- | 0.241 | -- | -0.0549 | 7.06 | -- | -- | -- | -- |
| 34.5 | 0.275 | 9.3 | 0.523 | 0.707 | -- | -- | -- | -0.0557 | 7 | -- | -- | -- | -- |
| 58.64 | 0.357 | 9.35 | 0.288 | -- | 0.298 | -- | -- | -0.145 | -- | 31.5 | 43072 | -- | -- |
| 33.55 | 0.27 | 9.35 | -- | 0.709 | 0.41 | -- | -- | -0.272 | 7.06 | 26.07 | 47520 | -- | -- |
| 60.82 | 0.364 | 9.32 | 0.537 | -- | -- | -- | -- | -0.0427 | -- | -- | -- | -- | -- |
| 41.7 | 0.302 | 9.31 | -- | 0.713 | -- | -- | -- | -0.114 | 6.95 | -- | -- | -- | -- |
| 59.38 | 0.359 | 9.35 | -- | -- | 0.421 | -- | -- | -0.202 | -- | 32.31 | 47520 | -- | -- |
| 68.43 | 0.386 | 9.33 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.94 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 3 | 27.06 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 4 | 27.06 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 6 | 27.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 8 | 27.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 9 | 27.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 15 | 27.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 17 | 27.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 18 | 27.19 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 20 | 27.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 30 | 27.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 34 | 27.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 38 | 27.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 39 | 27.26 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 54 | 27.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 78 | 27.34 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 86 | 27.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 126 | 27.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 15 |
| 157 | 27.47 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 158 | 27.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 178 | 27.49 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 200 | 27.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 15 |
| 210 | 27.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 219 | 27.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 243 | 27.53 | temperature | 15 | 4320 | > th | dose dependent | sin | 10 | NA |
| 303 | 27.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 308 | 27.57 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 400 | 27.61 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
| 443 | 27.63 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 444 | 27.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 470 | 27.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 471 | 27.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 472 | 27.64 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 473 | 27.64 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 494 | 27.64 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 20 |
| 501 | 27.65 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 505 | 27.65 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 533 | 27.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 18 |
| 677 | 27.69 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 681 | 27.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 724 | 27.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 763 | 27.71 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 815 | 27.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 818 | 27.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 863 | 27.73 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 919 | 27.73 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 931 | 27.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 5 |