BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0196500 Os01g0196500|J100062J10
(201 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13720.1 | chr3:4495202-4495768 REVERSE LENGTH=189 124 4e-29
AT1G55190.1 | chr1:20588450-20589019 FORWARD LENGTH=190 107 3e-24
AT3G13710.1 | chr3:4492992-4493558 REVERSE LENGTH=189 107 4e-24
AT2G38360.1 | chr2:16069840-16070502 REVERSE LENGTH=221 90 1e-18
AT1G08770.1 | chr1:2808933-2809562 FORWARD LENGTH=210 89 1e-18
AT1G17700.1 | chr1:6089588-6090130 FORWARD LENGTH=181 82 3e-16
AT5G05380.1 | chr5:1592214-1592867 FORWARD LENGTH=218 80 9e-16
AT3G56110.1 | chr3:20822228-20822857 REVERSE LENGTH=210 79 2e-15
AT1G04260.1 | chr1:1140749-1141297 REVERSE LENGTH=183 76 1e-14
AT5G01640.1 | chr5:241442-242113 REVERSE LENGTH=224 75 3e-14
AT2G40380.1 | chr2:16864734-16865375 REVERSE LENGTH=214 74 6e-14
AT5G07110.1 | chr5:2206121-2206771 FORWARD LENGTH=217 67 5e-12
AT5G56230.1 | chr5:22758768-22759328 REVERSE LENGTH=187 60 5e-10
AT1G55640.1 | chr1:20793771-20794334 FORWARD LENGTH=188 60 9e-10
>AT3G13720.1 | chr3:4495202-4495768 REVERSE LENGTH=189
Length = 188
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 71/93 (76%)
Query: 38 SRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFL 97
SRAK R LATRR WR + D H++GLP ++DA+ R++ NLA++ MNYAIVVL V+F
Sbjct: 23 SRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFF 82
Query: 98 SLLWHPASLIVFLVCMVAWLVLYFLRDEPIVLF 130
SL+WHP SLIVF V +V W+ LYFLRDEPI LF
Sbjct: 83 SLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLF 115
>AT1G55190.1 | chr1:20588450-20589019 FORWARD LENGTH=190
Length = 189
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 69/97 (71%)
Query: 35 DFFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAV 94
++ SRAK R + LATRRPW+ + D ++ LP DA R++ NL ++ NYAI VL +
Sbjct: 20 EYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFI 79
Query: 95 VFLSLLWHPASLIVFLVCMVAWLVLYFLRDEPIVLFG 131
+FLSLL+HP SLIV + +V W+ LYFLRDEP+V+FG
Sbjct: 80 LFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFG 116
>AT3G13710.1 | chr3:4492992-4493558 REVERSE LENGTH=189
Length = 188
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 38 SRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFL 97
SRAK R LATRR WR + D H+ GLP ++D + R++ NLA++ NYAIV+L V+F
Sbjct: 23 SRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFF 82
Query: 98 SLLWHPASLIVFLVCMVAWLVLYFLRDEPIVLF 130
SL+WHP SLIVF + W+ LYFLRD P+ +F
Sbjct: 83 SLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVF 115
>AT2G38360.1 | chr2:16069840-16070502 REVERSE LENGTH=221
Length = 220
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 35 DFFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAV 94
+F ++ L+ RRPW ELAD AL P S++DA +R+R N +++ +NY V A+
Sbjct: 38 NFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAI 97
Query: 95 VFLSLLWHPASLIVFLVCMVA-WLVLYFLR--DEPIVLFGR 132
V SL+ HP SL VFL+C++A WL LY R D+PIVLFGR
Sbjct: 98 VGFSLVTHPFSL-VFLLCLLASWLFLYLFRPTDQPIVLFGR 137
>AT1G08770.1 | chr1:2808933-2809562 FORWARD LENGTH=210
Length = 209
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 38 SRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFL 97
+RAK + + T RPWRE+ D AL LP +A ++ N++++ NYA+ VLA+VFL
Sbjct: 34 ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFL 93
Query: 98 SLLWHPASLIVFLVCMVAWLVLYFLRD--EPIVLFGR 132
L++HP S+I F+V + W++LYF RD + IV+ G+
Sbjct: 94 GLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGK 130
>AT1G17700.1 | chr1:6089588-6090130 FORWARD LENGTH=181
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 46 TALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPAS 105
+ LATRRPW+++ D + P LA R+RAN ++ NY IVVL VFLSL+W+P S
Sbjct: 31 SGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFS 90
Query: 106 LIVFLVCMVAWLVLYFLRDEPIVLFGR 132
L+V L + AWL LYFLRDEP+ +F R
Sbjct: 91 LLVLLALLGAWLFLYFLRDEPLTVFDR 117
>AT5G05380.1 | chr5:1592214-1592867 FORWARD LENGTH=218
Length = 217
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 36 FFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVV 95
F SR + +L+ RRPW EL D A+ P SL DAY R+R NL ++ +NY +V V+
Sbjct: 32 FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVL 91
Query: 96 FLSLLWHPASLIVFLVCMVAWLVLYFLR--DEPIVLFGR 132
LSLL HP SL+V L AW+ LY R D+P+V+ GR
Sbjct: 92 ALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGR 130
>AT3G56110.1 | chr3:20822228-20822857 REVERSE LENGTH=210
Length = 209
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 36 FFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVV 95
FFSR L+ RRPW EL D ++ P SL DA R+R NLA++ +NY +V V+
Sbjct: 29 FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVL 88
Query: 96 FLSLLWHPASLIVFLVCMVAWLVLYFLR--DEPIVLFGR 132
SL HP SL+V + + W+ LY R D+P+V+FGR
Sbjct: 89 AFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGR 127
>AT1G04260.1 | chr1:1140749-1141297 REVERSE LENGTH=183
Length = 182
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 52 RPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFLV 111
RPW + D A P S+ADA RV NL H+ +NY+I++ ++ L+L+ P +++ F+
Sbjct: 21 RPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIA 80
Query: 112 CMVAWLVLYFLRDEPIVLFG 131
+AW LYF R+EP+ +FG
Sbjct: 81 VGLAWFFLYFAREEPLTIFG 100
>AT5G01640.1 | chr5:241442-242113 REVERSE LENGTH=224
Length = 223
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 39 RAKARGAT-----ALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLA 93
RA G T L+ RPW EL D A P SL++A R R N +++ +NY +V
Sbjct: 37 RAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVAL 96
Query: 94 VVFLSLLWHPASLIVFLVCMVAWLVLYFLR--DEPIVLFGR 132
++ SLL HP SLI+ L +WL LY R D P++LFGR
Sbjct: 97 ILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGR 137
>AT2G40380.1 | chr2:16864734-16865375 REVERSE LENGTH=214
Length = 213
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 51 RRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFL 110
RRPW EL D + P SL D++ R+R NLA++ +NY+ +V V+ SLL HP SL+V L
Sbjct: 46 RRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLL 105
Query: 111 VCMVAWLVLYFLR--DEPIVLFGR 132
+ +W+ LY R D+P+VLFGR
Sbjct: 106 SLLGSWMFLYLFRSSDQPLVLFGR 129
>AT5G07110.1 | chr5:2206121-2206771 FORWARD LENGTH=217
Length = 216
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 47 ALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASL 106
A A RPW EL D A PPSL++A RVR N +++ NY +V ++ SLL HP +L
Sbjct: 40 ASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFAL 99
Query: 107 IVFLVCMVAWLVLYFLR--DEPIVLFGR 132
+ +WL LYF R D+P+V+ GR
Sbjct: 100 FLLASLAASWLFLYFFRPADQPLVIGGR 127
>AT5G56230.1 | chr5:22758768-22759328 REVERSE LENGTH=187
Length = 186
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 35 DFFSRAKARGATALATRRPWRELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLAV 94
D SR+ TA+++ RPW EL LP S + LR + N ++ +NY I+V
Sbjct: 19 DVVSRSIHNLTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTNFNYFFVNYTIIVSTC 78
Query: 95 VFLSLLW-HPASLIVFLVCMVAWLVLYFLRDEPIVL 129
+L+ P +LIV + WL+ +F R++P++L
Sbjct: 79 AAFALITASPVALIVVGAIIALWLIFHFFREDPLIL 114
>AT1G55640.1 | chr1:20793771-20794334 FORWARD LENGTH=188
Length = 187
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 35 DFFSRAKARGATALATRRPW-RELADPHALGLPPSLADAYLRVRANLAHYAMNYAIVVLA 93
D S + ++++ RPW E ++ P S + A RV+ NL H+A+NY ++ A
Sbjct: 21 DVISLSVHNLIASVSSYRPWWSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAA 80
Query: 94 VVFLSLLWHPASLIVFLVCMVAWLVLYFLRDEPIVLFGR 132
+ L L+ P +L+ + WL+LYF RD P+VL+GR
Sbjct: 81 SITLFLIGDPMALVTVASFVAMWLLLYFYRDHPLVLYGR 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,721,487
Number of extensions: 69732
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 16
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)