BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0183000 Os01g0183000|Os01g0183000
(367 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0183000 Similar to GmCK3p (EC 2.7.1.32) (Fragment) 709 0.0
Os01g0717000 Similar to GmCK1p (EC 2.7.1.32) 447 e-126
Os05g0535400 Choline/ethanolamine kinase family protein 437 e-123
Os09g0438400 Similar to Choline kinase alpha (EC 2.7.1.32) ... 105 6e-23
>Os01g0183000 Similar to GmCK3p (EC 2.7.1.32) (Fragment)
Length = 367
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/367 (93%), Positives = 344/367 (93%)
Query: 1 MVAVDXXXXXXXXXXXXMKRSASFDRVPEEARRILHRLAGELWGGDVDPAALAVSQLKGA 60
MVAVD MKRSASFDRVPEEARRILHRLAGELWGGDVDPAALAVSQLKGA
Sbjct: 1 MVAVDPPPREAAAAPPAMKRSASFDRVPEEARRILHRLAGELWGGDVDPAALAVSQLKGA 60
Query: 61 MTNEVFRITWPXXXXXXXXXXXDHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPR 120
MTNEVFRITWP DHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPR
Sbjct: 61 MTNEVFRITWPGGGGGEGEGEGDHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPR 120
Query: 121 LLGRFPNGRIEEFINARTLSAADLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRW 180
LLGRFPNGRIEEFINARTLSAADLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRW
Sbjct: 121 LLGRFPNGRIEEFINARTLSAADLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRW 180
Query: 181 LEEARGRCSPEEARQFSLEKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQV 240
LEEARGRCSPEEARQFSLEKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQV
Sbjct: 181 LEEARGRCSPEEARQFSLEKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQV 240
Query: 241 TLIDYEYASFNPVAFDIANHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGE 300
TLIDYEYASFNPVAFDIANHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGE
Sbjct: 241 TLIDYEYASFNPVAFDIANHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGE 300
Query: 301 NPSDAEVEHLLGLIAKYSLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQ 360
NPSDAEVEHLLGLIAKYSLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQ
Sbjct: 301 NPSDAEVEHLLGLIAKYSLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQ 360
Query: 361 TLGSKSN 367
TLGSKSN
Sbjct: 361 TLGSKSN 367
>Os01g0717000 Similar to GmCK1p (EC 2.7.1.32)
Length = 368
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/355 (62%), Positives = 267/355 (75%), Gaps = 13/355 (3%)
Query: 21 SASFDRVPEEARRILHRLAGELWGGDVDPAALAVSQLKGAMTNEVFRITW----PXXX-- 74
+A+ R+P EARR+LH +A W D AL V LKGAMTNEV+++ W P
Sbjct: 16 AAAQPRIPREARRLLHEMAAS-WADVADCRALQVIPLKGAMTNEVYQVRWLNGAPATADG 74
Query: 75 ----XXXXXXXXDHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRI 130
+ RKVLVRIYG GVE+FFDR DEVRTFECMSRHGQGPRLLGRF NGR+
Sbjct: 75 GEVEAEAAAREREVRKVLVRIYGDGVELFFDREDEVRTFECMSRHGQGPRLLGRFTNGRV 134
Query: 131 EEFINARTLSAADLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSP 190
EEFI+ARTLSAADLRD EIS+L+A KLREFH+LDMPGPK+V +W RL+ WL+ AR CS
Sbjct: 135 EEFIHARTLSAADLRDPEISALVASKLREFHNLDMPGPKSVLIWDRLKNWLKTARNLCSS 194
Query: 191 EEARQFSLEKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASF 250
+E+++F L L +EIA L+ SG +GFCHNDLQYGNIMI E+T +T+IDYEYASF
Sbjct: 195 DESKKFRLGSLENEIAALEKEFSGDYHGIGFCHNDLQYGNIMIDEDTNMLTIIDYEYASF 254
Query: 251 NPVAFDIANHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSS-GENPSDAEVEH 309
NPVA+DIANHFCEM+ADYHS PH LD++KYP DEQ+RFV+TYLS+S E P EVE+
Sbjct: 255 NPVAYDIANHFCEMAADYHSEKPHRLDYSKYPDTDEQKRFVKTYLSNSVSEEPDAEEVEN 314
Query: 310 LLGLIAKYSLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQTLGS 364
LL I KY+LASH+ WGLWGIIS HVN +IDF+Y+EYARQRF+QYW+ K L S
Sbjct: 315 LLQSIEKYTLASHLVWGLWGIISDHVN-DIDFDYKEYARQRFEQYWQKKQALLTS 368
>Os05g0535400 Choline/ethanolamine kinase family protein
Length = 352
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 261/347 (75%), Gaps = 6/347 (1%)
Query: 19 KRSASFDRVPEEARRILHRLAGELWGGDVDPAALAVSQLKGAMTNEVFRITWPXXXXXXX 78
K +A+ +PE AR++LH LA WG D AL V L+GAMTNEV++ WP
Sbjct: 9 KAAAAGSSIPEGARQLLHELAAG-WGDVADCRALEVVPLRGAMTNEVYQARWPPAAEAEA 67
Query: 79 XXXXDHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINART 138
R+VLVR+YG+GVE+FFDR EVRTFE MSRHG GPRLLGRFPNGR+EEFI+ART
Sbjct: 68 AG----RRVLVRVYGEGVELFFDREAEVRTFESMSRHGHGPRLLGRFPNGRVEEFIHART 123
Query: 139 LSAADLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSPEEARQFSL 198
LSA DLRD EIS++IA KLREFH+LDMPGPK+V +W RLR WL+ A+ C +EA++F L
Sbjct: 124 LSAVDLRDPEISAIIASKLREFHNLDMPGPKSVLIWDRLRNWLKTAKNLCPSDEAKEFCL 183
Query: 199 EKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDIA 258
+ + +EI L+ LS Q VGFCHNDLQYGNIMI EET+ +T+IDYEYASF PVA+DIA
Sbjct: 184 DSMENEITALENELSEDYQCVGFCHNDLQYGNIMIDEETKLLTIIDYEYASFGPVAYDIA 243
Query: 259 NHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGENPSDAEVEHLLGLIAKYS 318
NHFCEM+ADYHS PH+LD+TKYP DEQ++FVQ+YLSSSGE P +V +L+ I KY+
Sbjct: 244 NHFCEMAADYHSEKPHILDYTKYPDTDEQKQFVQSYLSSSGEEPDAEKVNNLIKSIEKYT 303
Query: 319 LASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQTLGSK 365
LASH+ W LWGIIS HVN +IDF+Y YARQRF+QYW K L +
Sbjct: 304 LASHLIWALWGIISEHVN-DIDFDYMGYARQRFEQYWLKKPAILTCQ 349
>Os09g0438400 Similar to Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha).
Splice isoform 3
Length = 388
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 132/285 (46%), Gaps = 42/285 (14%)
Query: 83 DHRKVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAA 142
+ V VR+YG ++ DR E++ +S G G +LLG F NG ++ FI ARTL+ +
Sbjct: 128 NKSSVTVRLYGPNTDLVIDRKRELQAIPHLSAAGFGAQLLGTFENGMVQSFIYARTLTPS 187
Query: 143 DLRDAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSPEEARQ-----FS 197
D+++ I++ IAK++R FH +D+PG K LW + +++++A ++ +Q S
Sbjct: 188 DMKEPRIAAEIAKEIRRFHQVDIPGSKEPQLWDDIFKFMKKASILEFEDKEKQKRYETIS 247
Query: 198 LEKLGDEIAMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDI 257
K+ DE+ L + + + +G T V +I + S N A I
Sbjct: 248 FRKIQDEVKELKKSSTSLISSMG---------------RTATVVMI-LQTISMNMQAM-I 290
Query: 258 ANHFCEMSADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGENPSDAEVEHLLGLIAKY 317
A C +L+ T I VQ +++ L Y
Sbjct: 291 ATIAC--------IQIKILNTTSSGTIFNLIGQVQL-----------QDLDALYVETNTY 331
Query: 318 SLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQTL 362
LASHI+W LW +I V+ IDF+Y Y R+D+Y K ++ L
Sbjct: 332 RLASHIYWALWALIQAKVSP-IDFDYLGYFFLRYDEYKKQRESCL 375
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,704,177
Number of extensions: 471527
Number of successful extensions: 1081
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1074
Number of HSP's successfully gapped: 4
Length of query: 367
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,709,973
Effective search space: 3103142845
Effective search space used: 3103142845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)