Os09g0438400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha). Splice isoform 3.
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Os09g0438400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha). Splice isoform 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.87 | 0.265 | 11.1 | -0.229 | 1.28 | -0.59 | -0.793 | 0.14 | 0.171 | 12.4 | 10.67 | 123 | -- | -- |
| 31.87 | 0.263 | 11.1 | -0.243 | 1.29 | -0.6 | -0.675 | -- | 0.164 | 12.4 | 10.44 | 130 | -- | -- |
| 33.24 | 0.269 | 11.1 | -0.259 | 1.23 | -0.582 | -- | -0.195 | 0.165 | 12.4 | 11.18 | 142 | -- | -- |
| 33.73 | 0.27 | 11.1 | -0.258 | 1.31 | -0.618 | -- | -- | 0.156 | 12.5 | 10.46 | 136 | -- | -- |
| 42.85 | 0.305 | 11.1 | -0.271 | -- | 0.696 | -- | -0.234 | 0.151 | -- | 1.403e-06 | 96 | -- | -- |
| 40.71 | 0.299 | 11.1 | -0.31 | 0.725 | -- | -0.814 | -- | 0.126 | 11.9 | -- | -- | -- | -- |
| 43.58 | 0.309 | 11.1 | -0.343 | 0.728 | -- | -- | -- | 0.122 | 11.9 | -- | -- | -- | -- |
| 41.75 | 0.301 | 11.1 | -0.348 | -- | 0.582 | -- | -- | 0.0567 | -- | 0.008123 | 68 | -- | -- |
| 35.33 | 0.277 | 11.1 | -- | 1.33 | -0.637 | -- | -- | 0.195 | 12.5 | 10.09 | 139 | -- | -- |
| 76.95 | 0.41 | 11.1 | -0.365 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 46.68 | 0.32 | 11.1 | -- | 0.732 | -- | -- | -- | 0.16 | 11.9 | -- | -- | -- | -- |
| 46.18 | 0.316 | 11.1 | -- | -- | 0.558 | -- | -- | 0.069 | -- | 0.009999 | 70 | -- | -- |
| 80.46 | 0.419 | 11.1 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.95 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 24 | 28.03 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 26 | 28.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 31 | 28.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 36 | 28.33 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 40 | 28.42 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 44 | 28.51 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 52 | 28.58 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 63 | 28.70 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 66 | 28.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 71 | 28.80 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 82 | 28.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 90 | 28.98 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 93 | 28.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 22 |
| 95 | 28.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 103 | 29.06 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 126 | 29.27 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 135 | 29.30 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 137 | 29.30 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 164 | 29.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 167 | 29.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 188 | 29.56 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 189 | 29.56 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 197 | 29.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 199 | 29.63 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 207 | 29.67 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 214 | 29.70 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 228 | 29.77 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 230 | 29.78 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 239 | 29.80 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 253 | 29.87 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 266 | 29.90 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 274 | 29.96 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 287 | 30.00 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 306 | 30.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 313 | 30.08 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 314 | 30.08 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 316 | 30.08 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 317 | 30.08 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 319 | 30.08 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 320 | 30.08 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 321 | 30.08 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 328 | 30.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 334 | 30.11 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 335 | 30.11 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 336 | 30.11 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 373 | 30.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 374 | 30.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 376 | 30.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 377 | 30.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 380 | 30.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 381 | 30.20 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 382 | 30.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 404 | 30.25 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 414 | 30.26 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 422 | 30.27 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 423 | 30.27 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 426 | 30.28 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 427 | 30.28 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 432 | 30.29 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 438 | 30.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 440 | 30.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 441 | 30.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 451 | 30.32 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 18 |
| 458 | 30.35 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 459 | 30.35 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 507 | 30.43 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 508 | 30.43 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 511 | 30.43 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 513 | 30.43 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 514 | 30.43 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 518 | 30.43 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 549 | 30.47 | radiation | 10.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 566 | 30.51 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 9 |
| 568 | 30.51 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 572 | 30.51 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 577 | 30.52 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 634 | 30.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 674 | 30.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 691 | 30.71 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 692 | 30.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 706 | 30.73 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 756 | 30.80 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 763 | 30.81 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 770 | 30.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 771 | 30.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 789 | 30.86 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 806 | 30.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 822 | 30.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 841 | 30.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 854 | 30.93 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 856 | 30.93 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 857 | 30.93 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 860 | 30.93 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 861 | 30.93 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 866 | 30.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 868 | 30.93 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 924 | 30.96 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 931 | 30.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 966 | 30.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 967 | 30.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 970 | 31.00 | radiation | 10.0 | 270 | > th | dose independent | sin | 3 | NA |