BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0176400 Os01g0176400|AK111327
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0176400 Similar to Photoreceptor-interacting protein-like 260 5e-70
Os05g0178000 NPH3 domain containing protein 160 4e-40
Os01g0944066 144 4e-35
Os01g0943100 144 4e-35
Os02g0568200 NPH3 domain containing protein 64 6e-11
Os03g0609800 BTB domain containing protein 64 7e-11
>Os01g0176400 Similar to Photoreceptor-interacting protein-like
Length = 194
Score = 260 bits (664), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/194 (71%), Positives = 139/194 (71%)
Query: 1 GEQAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEHGKLNRLAE 60
GEQAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEHGKLNRLAE
Sbjct: 1 GEQAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEHGKLNRLAE 60
Query: 61 LXXXXXXXXXXXXXXDLPGARCPSKREVLAQHHELRRLREDFARLQVQCSALQAQVDRLS 120
L DLPGARCPSKREVLAQHHELRRLREDFARLQVQCSALQAQVDRLS
Sbjct: 61 LSGGASSFGAPSPAFDLPGARCPSKREVLAQHHELRRLREDFARLQVQCSALQAQVDRLS 120
Query: 121 TEXXXXXXXXXXXXXXXXXXXXXXXXXMSADVARVEDSESGIERRTPXXXXXXXXXXXXX 180
TE MSADVARVEDSESGIERRTP
Sbjct: 121 TERRRRGGGGSGGGGGFFKWSTFWFGGMSADVARVEDSESGIERRTPASGKKGRGGAAGA 180
Query: 181 XXXTPTPKWRKSMS 194
TPTPKWRKSMS
Sbjct: 181 AAATPTPKWRKSMS 194
>Os05g0178000 NPH3 domain containing protein
Length = 501
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/129 (68%), Positives = 95/129 (73%), Gaps = 9/129 (6%)
Query: 3 QAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEHG-KLNRLAEL 61
+AH KEER+SLCRLIDARKLTAEAAAHAVQN+RLPVR V+QVLFSEHG KL RLAE
Sbjct: 299 KAHPHAGKEERRSLCRLIDARKLTAEAAAHAVQNERLPVRCVVQVLFSEHGSKLTRLAEW 358
Query: 62 XXXXXXXXXXXXXXDL--------PGARCPSKREVLAQHHELRRLREDFARLQVQCSALQ 113
DL GARCPSKREV AQHHELRRLRED +RLQVQC ALQ
Sbjct: 359 TTGSFRSLQSRSPADLIVTGGGANGGARCPSKREVAAQHHELRRLREDVSRLQVQCHALQ 418
Query: 114 AQVDRLSTE 122
AQVDRLS+E
Sbjct: 419 AQVDRLSSE 427
>Os01g0944066
Length = 157
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 85/133 (63%), Gaps = 18/133 (13%)
Query: 35 QNDRLPVRSVLQVLFSEHGKLNRLAELXXXXXXXXXXXXXXDLPGARCPSKREVLAQHHE 94
QNDRLPVRSVLQ+LFSEHGKLNRLAEL PS REVLAQHHE
Sbjct: 31 QNDRLPVRSVLQMLFSEHGKLNRLAELSGGASFG-------------APSLREVLAQHHE 77
Query: 95 LRRLREDFARLQVQCSALQAQVDRLSTEXXXXXXXXXXXXXXXXXXXXXXXXXMSADVAR 154
LRRLREDFARLQVQCSALQAQVDRLS E MS+DVAR
Sbjct: 78 LRRLREDFARLQVQCSALQAQVDRLSME-----RRWHGGGGGFFKWSTFWFGGMSSDVAR 132
Query: 155 VEDSESGIERRTP 167
VEDSESGIERRTP
Sbjct: 133 VEDSESGIERRTP 145
>Os01g0943100
Length = 157
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 85/133 (63%), Gaps = 18/133 (13%)
Query: 35 QNDRLPVRSVLQVLFSEHGKLNRLAELXXXXXXXXXXXXXXDLPGARCPSKREVLAQHHE 94
QNDRLPVRSVLQ+LFSEHGKLNRLAEL PS REVLAQHHE
Sbjct: 31 QNDRLPVRSVLQMLFSEHGKLNRLAELSGGASFG-------------APSLREVLAQHHE 77
Query: 95 LRRLREDFARLQVQCSALQAQVDRLSTEXXXXXXXXXXXXXXXXXXXXXXXXXMSADVAR 154
LRRLREDFARLQVQCSALQAQVDRLS E MS+DVAR
Sbjct: 78 LRRLREDFARLQVQCSALQAQVDRLSME-----RRWHGGGGGFFKWSTFWFGGMSSDVAR 132
Query: 155 VEDSESGIERRTP 167
VEDSESGIERRTP
Sbjct: 133 VEDSESGIERRTP 145
>Os02g0568200 NPH3 domain containing protein
Length = 762
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 3 QAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEHGKLNRLAELX 62
+AH + ++ ERK LCR++D +KL+ +A HA QN+RLP+R V+QVLF+E K++
Sbjct: 556 KAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASS 615
Query: 63 XXXXXXXXXXXXXD----LPGAR---------------CPSKREVLAQHHELRRLREDFA 103
D +P R +K+++ EL ++ +
Sbjct: 616 SAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYL 675
Query: 104 RLQVQCSALQAQVD 117
LQ + ALQ QVD
Sbjct: 676 ELQHEMDALQKQVD 689
>Os03g0609800 BTB domain containing protein
Length = 634
Score = 63.9 bits (154), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 3 QAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLFSEH-------GKL 55
+ H S SK E+K+LCRL+D +KL+ +A HAVQN+RLP+R V+QVLF E G+
Sbjct: 439 KEHPSLSKSEKKALCRLMDCKKLSQDACLHAVQNERLPLRVVVQVLFFEQIRASAASGRT 498
Query: 56 NRLAEL 61
+ AEL
Sbjct: 499 DAAAEL 504
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,279,313
Number of extensions: 106683
Number of successful extensions: 313
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 8
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)