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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0176400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photoreceptor-interacting protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.051) R2 : 0.36
β1 : -0.906 (0.195) R2dD : 0.0343 R2D : -0.0135
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.87 (0.188) R2dE : 0.379 R2E : 0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.72 (1.08) R2dD*E : 0.0303 R2D*E : -0.0489
γ1 : -0.337 (0.108) R2dN8 : 0.0215 R2N8 : 0.00867
σ : 0.942
deviance : 408.92
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 3.082
memory length : 74
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.26
open length of G : 4.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
400.73 0.941 3.58 -0.861 0.212 2.92 -2.02 -3.23 -0.348 5.64 2.642 93 3.22 4
405.52 0.938 3.57 -0.666 0.176 2.71 -2.62 -- -0.354 5.46 2.711 89 3.22 4.07
408.17 0.941 3.61 -0.93 0.353 2.78 -- -3.78 -0.346 6.87 2.614 95 3.22 3.96
423.69 0.959 3.56 -0.669 0.35 2.4 -- -- -0.316 6.76 2.945 86 3.22 4.08
408.92 0.942 3.59 -0.906 -- 2.87 -- -3.72 -0.337 -- 3.082 74 3.26 4.1
516.88 1.07 3.54 -0.498 1.41 -- -1.9 -- -0.366 6.02 -- -- -- --
525.59 1.07 3.54 -0.514 1.4 -- -- -- -0.358 6.14 -- -- -- --
424.94 0.96 3.57 -0.69 -- 2.57 -- -- -0.338 -- 3.237 75 3.24 4.14
434.28 0.971 3.54 -- 0.311 2.3 -- -- -0.252 6.89 3.085 75 3.23 4.12
627.37 1.17 3.56 -0.474 -- -- -- -- -0.327 -- -- -- -- --
532.54 1.08 3.53 -- 1.39 -- -- -- -0.301 6.16 -- -- -- --
437.37 0.974 3.55 -- -- 2.47 -- -- -0.272 -- 3.36 74 3.23 4.16
633.31 1.17 3.55 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.13 wind 3.0 90 < th dose dependent rect. 3 4
2 406.50 atmosphere 1015.0 270 < th dose dependent rect. 1 5
3 406.80 wind 3.0 90 < th dose dependent rect. 3 6
5 409.63 atmosphere 1015.0 270 < th dose dependent rect. 2 3
12 415.57 humidity 70.0 270 > th dose dependent rect. 1 5
14 416.15 wind 1.0 270 < th dose independent rect. 4 1
15 416.66 wind 5.0 10 < th dose dependent rect. 3 6
22 417.78 humidity 80.0 90 > th dose dependent rect. 3 4
27 419.62 temperature 30.0 1440 < th dose independent rect. 17 15
32 419.89 wind 7.0 270 < th dose dependent rect. 1 5
39 420.65 temperature 30.0 1440 < th dose independent rect. 17 7
63 421.80 wind 5.0 270 < th dose independent rect. 1 5
68 422.34 temperature 30.0 1440 > th dose independent rect. 17 2
85 422.51 wind 3.0 10 < th dose dependent rect. 4 2
89 422.67 temperature 30.0 1440 > th dose dependent rect. 18 15
121 423.42 humidity 90.0 90 > th dose independent rect. 3 4
142 424.44 humidity 80.0 270 > th dose independent rect. 1 5
152 425.07 humidity 90.0 90 > th dose independent rect. 4 1
155 425.35 temperature 30.0 1440 < th dose independent sin 11 NA
159 425.50 wind 3.0 90 < th dose independent rect. 3 3
169 426.21 precipitation 0.1 270 < th dose independent rect. 1 5
170 426.21 precipitation 0.1 270 < th dose dependent rect. 1 5
171 426.25 temperature 30.0 1440 > th dose dependent sin 11 NA
175 426.31 wind 3.0 90 < th dose independent rect. 3 6
176 426.38 temperature 30.0 1440 > th dose independent sin 11 NA
182 426.54 temperature 30.0 1440 > th dose dependent rect. 16 17
188 426.75 temperature 30.0 1440 > th dose dependent rect. 16 19
189 426.77 temperature 30.0 1440 > th dose dependent rect. 16 3
244 427.93 atmosphere 1010.0 270 < th dose independent rect. 1 5
260 428.00 temperature 10.0 270 > th dose independent rect. 1 5
262 428.00 temperature 30.0 270 < th dose independent rect. 1 5
263 428.00 humidity 50.0 270 > th dose independent rect. 1 5
266 428.00 atmosphere 995.0 270 > th dose independent rect. 1 5
268 428.00 radiation 20.0 270 < th dose independent rect. 1 5
271 428.00 temperature 10.0 270 > th dose independent rect. 6 19
298 428.38 temperature 30.0 1440 > th dose dependent rect. 13 20
304 428.43 temperature 30.0 1440 > th dose dependent rect. 13 6
375 428.77 radiation 40.0 270 < th dose dependent rect. 1 5
386 428.95 radiation 1.0 270 < th dose dependent rect. 1 5
467 429.35 temperature 30.0 14400 < th dose independent rect. 18 10
476 429.53 temperature 30.0 1440 > th dose dependent no NA NA
595 429.81 precipitation 0.1 270 < th dose independent rect. 2 3
597 429.81 precipitation 0.1 270 < th dose dependent rect. 2 3
649 430.27 atmosphere 1010.0 10 < th dose dependent rect. 4 2
694 430.65 temperature 30.0 14400 < th dose independent rect. 18 2
696 430.67 temperature 30.0 14400 < th dose independent rect. 18 5
705 430.78 precipitation 0.1 270 < th dose independent rect. 6 19
706 430.78 precipitation 0.1 270 < th dose dependent rect. 6 19
732 430.87 radiation 1.0 270 < th dose dependent rect. 2 3
733 430.90 temperature 25.0 90 < th dose independent rect. 4 1
737 430.99 radiation 1.0 270 < th dose independent rect. 1 5
800 431.67 temperature 10.0 270 > th dose independent rect. 2 3
802 431.67 temperature 30.0 270 < th dose independent rect. 2 3
803 431.67 humidity 50.0 270 > th dose independent rect. 2 3
806 431.67 atmosphere 995.0 270 > th dose independent rect. 2 3
807 431.67 atmosphere 1010.0 270 < th dose independent rect. 2 3
809 431.67 radiation 20.0 270 < th dose independent rect. 2 3
812 431.67 atmosphere 995.0 270 > th dose independent rect. 6 19
813 431.67 temperature 10.0 270 > th dose independent rect. 5 21
819 431.76 radiation 40.0 270 < th dose dependent rect. 2 3
834 432.18 radiation 1.0 270 < th dose independent rect. 2 3
846 432.38 wind 9.0 270 < th dose independent rect. 6 19
872 432.54 temperature 10.0 270 > th dose dependent rect. 1 5
873 432.55 humidity 50.0 14400 > th dose independent rect. 16 1
893 432.63 atmosphere 1000.0 43200 > th dose independent rect. 18 1
901 432.71 humidity 50.0 14400 < th dose independent rect. 16 1
902 432.73 radiation 20.0 1440 > th dose independent rect. 16 15
963 433.08 humidity 70.0 14400 < th dose dependent rect. 18 1
966 433.10 humidity 80.0 10 > th dose dependent rect. 4 3
976 433.21 temperature 30.0 1440 > th dose independent rect. 10 9
992 433.22 humidity 50.0 14400 > th dose independent rect. 16 18