BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0174100 Os01g0174100|AK120465
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0174100  Conserved hypothetical protein                      227   1e-60
Os05g0176300  Conserved hypothetical protein                       88   1e-18
Os06g0601100  Conserved hypothetical protein                       87   2e-18
Os01g0704901                                                       64   2e-11

>Os01g0174100 Conserved hypothetical protein
          Length = 111

 Score =  227 bits (579), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MAALQRSSQTFRRSGSSGLVWDERLMLDGHSERDQEDGALELRHSRSVGLIGLQRRHGDG 60
           MAALQRSSQTFRRSGSSGLVWDERLMLDGHSERDQEDGALELRHSRSVGLIGLQRRHGDG
Sbjct: 1   MAALQRSSQTFRRSGSSGLVWDERLMLDGHSERDQEDGALELRHSRSVGLIGLQRRHGDG 60

Query: 61  AGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFCGIFRKPVLSEPSKPRRF 111
           AGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFCGIFRKPVLSEPSKPRRF
Sbjct: 61  AGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFCGIFRKPVLSEPSKPRRF 111



>Os05g0176300 Conserved hypothetical protein
          Length = 99

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 63/100 (63%), Gaps = 11/100 (11%)

Query: 22  DERLMLDGHSERDQ------EDGALE---LRHSRSVGL-IGLQRRHGDGAGHTRCNNSQA 71
           D RLM +  ++ DQ      E G+LE   LRHSRSVG  I +QRR  D    +R  N QA
Sbjct: 1   DGRLMSEDQNQSDQRATGDAEAGSLESKELRHSRSVGSSIKVQRRCSDSVERSRSGN-QA 59

Query: 72  FHTRRVPPAQDPPSPKVPGCIFCGIFRKPVLSEPSKPRRF 111
           F TR VPPA DPPSPKV  C+FCGIF K   S+P KPRR+
Sbjct: 60  FRTRHVPPAMDPPSPKVSRCLFCGIFSKEEPSQPPKPRRY 99



>Os06g0601100 Conserved hypothetical protein
          Length = 149

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 64/129 (49%), Gaps = 32/129 (24%)

Query: 1   MAALQRSSQTFRRSGSSGLVWDERLML-DGHSER--------DQEDGALELRHSRSVGLI 51
           MA LQRS+ TFRRSGSSGLVWDER +  D  + +          E+   ELRHS+SVG I
Sbjct: 2   MAGLQRSATTFRRSGSSGLVWDERFLTEDAEAAKAGDGDGGGGTEEPQPELRHSKSVGSI 61

Query: 52  GLQRRHG-----------------------DGAGHTRCNNSQAFHTRRVPPAQDPPSPKV 88
           G+ RR                         DG       + Q F T+ + P  DPPSP+V
Sbjct: 62  GMMRRVAADDGDDSEKTTKQQRKKKKKKKKDGQKEDDNRSQQVFRTKDIAPDVDPPSPRV 121

Query: 89  PGCIFCGIF 97
            GCI C IF
Sbjct: 122 SGCILCSIF 130



>Os01g0704901 
          Length = 103

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 15/99 (15%)

Query: 1  MAALQRSSQTFRRSGSSGLVWDERLMLDGHSERDQEDGALELRHSRSVGLIGLQRRHGDG 60
          MA LQRSS+TFRRSGSSG+VW+++L         Q+ G L  +            +    
Sbjct: 1  MAGLQRSSETFRRSGSSGMVWEDKL---------QQSGELGGKAEAPAPAARAAAQRSGS 51

Query: 61 AGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFCGIFRK 99
          +GH        +    V PA DPPSP+V  C FC +F K
Sbjct: 52 SGHG------GYKAGHVQPALDPPSPRVAACGFCNLFGK 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,837,919
Number of extensions: 220353
Number of successful extensions: 924
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 4
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)