Os06g0601100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0601100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.42 | 0.255 | 13.3 | -0.349 | 1.27 | -0.0585 | -0.106 | -2.91 | 0.017 | 8.87 | 20.66 | 406 | -- | -- |
| 35.09 | 0.276 | 13.2 | 0.26 | 1.23 | -0.272 | -0.0366 | -- | 0.178 | 8.83 | 24.21 | 566 | -- | -- |
| 29.45 | 0.253 | 13.3 | -0.346 | 1.27 | -0.0559 | -- | -2.89 | 0.0173 | 8.88 | 20.8 | 397 | -- | -- |
| 34.56 | 0.274 | 13.2 | 0.232 | 1.2 | -0.369 | -- | -- | 0.156 | 9.09 | 25.5 | 380 | -- | -- |
| 94.47 | 0.453 | 13.3 | 0.345 | -- | -1.1 | -- | -0.771 | 0.146 | -- | 24.43 | 639 | -- | -- |
| 36.75 | 0.284 | 13.2 | 0.163 | 1.31 | -- | 0.315 | -- | 0.139 | 8.69 | -- | -- | -- | -- |
| 37.07 | 0.285 | 13.2 | 0.173 | 1.31 | -- | -- | -- | 0.139 | 8.72 | -- | -- | -- | -- |
| 93.63 | 0.451 | 13.2 | 0.419 | -- | -1.2 | -- | -- | 0.263 | -- | 24.4 | 647 | -- | -- |
| 35.97 | 0.279 | 13.2 | -- | 1.22 | -0.33 | -- | -- | 0.138 | 9.06 | 25.3 | 364 | -- | -- |
| 134.32 | 0.542 | 13.3 | 0.176 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 37.86 | 0.288 | 13.2 | -- | 1.31 | -- | -- | -- | 0.12 | 8.71 | -- | -- | -- | -- |
| 98.03 | 0.461 | 13.2 | -- | -- | -1.12 | -- | -- | 0.207 | -- | 24.5 | 638 | -- | -- |
| 135.14 | 0.543 | 13.3 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.05 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 18 |
| 8 | 29.34 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 30 | 29.55 | radiation | 10 | 720 | < th | dose independent | rect. | 2 | 8 |
| 32 | 29.56 | temperature | 25 | 720 | < th | dose independent | sin | 11 | NA |
| 38 | 29.64 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 39 | 29.68 | radiation | 10 | 720 | < th | dose independent | rect. | 2 | 11 |
| 40 | 29.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 45 | 29.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 50 | 29.75 | radiation | 20 | 720 | < th | dose dependent | sin | 7 | NA |
| 58 | 29.78 | radiation | 10 | 720 | < th | dose independent | sin | 11 | NA |
| 60 | 29.78 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 67 | 29.80 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 75 | 29.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 78 | 29.84 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 84 | 29.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 85 | 29.86 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 19 |
| 89 | 29.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 107 | 29.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 117 | 29.93 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 121 | 29.94 | radiation | 10 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 143 | 29.99 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 18 |
| 159 | 30.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 216 | 30.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 228 | 30.14 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 266 | 30.19 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 16 |
| 275 | 30.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 307 | 30.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 363 | 30.34 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 404 | 30.40 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 19 |
| 407 | 30.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 437 | 30.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 465 | 30.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 18 |
| 553 | 30.56 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 607 | 30.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 613 | 30.61 | radiation | 10 | 720 | < th | dose independent | sin | 5 | NA |
| 722 | 30.68 | radiation | 40 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 757 | 30.71 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 19 |
| 776 | 30.72 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 21 |
| 827 | 30.75 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 828 | 30.75 | radiation | 20 | 720 | < th | dose dependent | rect. | 6 | 4 |
| 866 | 30.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 990 | 30.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |