BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0172300 Os01g0172300|AK106113
(186 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0172300 Conserved hypothetical protein 352 9e-98
Os02g0201000 Conserved hypothetical protein 121 4e-28
Os07g0479600 Conserved hypothetical protein 94 8e-20
>Os01g0172300 Conserved hypothetical protein
Length = 186
Score = 352 bits (903), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 173/186 (93%), Positives = 173/186 (93%)
Query: 1 MAALXXXXXXXXXXXXXSASRVGDWGVDLGEGWDWRSIPKLLSSACLFICSGGCFGCCDK 60
MAAL SASRVGDWGVDLGEGWDWRSIPKLLSSACLFICSGGCFGCCDK
Sbjct: 1 MAALGGGGGGGGGGEGGSASRVGDWGVDLGEGWDWRSIPKLLSSACLFICSGGCFGCCDK 60
Query: 61 AVRHVGQLSKSLITPDQNYTIGDELWSTTTIEVEQSWALDQQGVGSSQGPTEFVNHGLVL 120
AVRHVGQLSKSLITPDQNYTIGDELWSTTTIEVEQSWALDQQGVGSSQGPTEFVNHGLVL
Sbjct: 61 AVRHVGQLSKSLITPDQNYTIGDELWSTTTIEVEQSWALDQQGVGSSQGPTEFVNHGLVL 120
Query: 121 WKEIRKDWTAKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWE 180
WKEIRKDWTAKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWE
Sbjct: 121 WKEIRKDWTAKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWE 180
Query: 181 QEGLYD 186
QEGLYD
Sbjct: 181 QEGLYD 186
>Os02g0201000 Conserved hypothetical protein
Length = 109
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 62/87 (71%)
Query: 100 DQQGVGSSQGPTEFVNHGLVLWKEIRKDWTAKTRQIPETKQIREPILSWNAAYESLLGSN 159
DQ G GSS P EFVN GL+LW + R+ W R + +Q REP +SWNA YESLLGS
Sbjct: 23 DQHGAGSSTNPNEFVNQGLLLWNQTRQQWVGNRRHNSQRQQPREPKISWNATYESLLGST 82
Query: 160 KPFHQPIPLHEMVDFLVDIWEQEGLYD 186
KPF Q IPL EMVDFLVD WEQEGLYD
Sbjct: 83 KPFPQAIPLGEMVDFLVDGWEQEGLYD 109
>Os07g0479600 Conserved hypothetical protein
Length = 149
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 31/156 (19%)
Query: 55 FGCCDKAVRHVGQLSKSLITPD-----------QNYTIGDELWSTTTIEVEQS------- 96
GCC +G LSKS PD ++ +IG ++ +E ++
Sbjct: 1 MGCC------IGNLSKSQPLPDYKPKTSVRKKPRHLSIGKRRQCSSGLEAMENNVSVSVS 54
Query: 97 -----WALDQQGVGSSQGP-TEFVNHGLVLWKEIRKDWTAKTRQIPETKQIREPILSWNA 150
+L + S G T F+NH + W E+R+ WT ++P+ +EPI+SW
Sbjct: 55 LEGNISSLPNSIINDSNGKDTSFINHAAIAWAEMRRQWTGDQEKVPKEAS-QEPIISWCT 113
Query: 151 AYESLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLYD 186
Y+ LL +++ F QPIPL EMVDFLVDIW +EGLYD
Sbjct: 114 TYDDLLSTSERFPQPIPLSEMVDFLVDIWHEEGLYD 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,756,912
Number of extensions: 276299
Number of successful extensions: 719
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)