BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0169800 Os01g0169800|AK061054
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0169800 Allinase, C-terminal domain containing protein 445 e-125
Os05g0169300 Allinase, C-terminal domain containing protein 297 4e-81
Os01g0717700 EGF-like, alliinase domain containing protein 145 3e-35
Os01g0717400 EGF-like, alliinase domain containing protein 135 3e-32
>Os01g0169800 Allinase, C-terminal domain containing protein
Length = 214
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM 60
PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM
Sbjct: 1 PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM 60
Query: 61 TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS 120
TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS
Sbjct: 61 TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS 120
Query: 121 MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR 180
MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR
Sbjct: 121 MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR 180
Query: 181 SGAQFGADARYVRVSMLDRDDAFDIFINRLSSLK 214
SGAQFGADARYVRVSMLDRDDAFDIFINRLSSLK
Sbjct: 181 SGAQFGADARYVRVSMLDRDDAFDIFINRLSSLK 214
>Os05g0169300 Allinase, C-terminal domain containing protein
Length = 441
Score = 297 bits (760), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 137/213 (64%), Positives = 169/213 (79%), Gaps = 1/213 (0%)
Query: 2 KTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMT 61
K+G+G VHDLAYYWPQYTPIT A+HDIMLFTVSK TGHAGTR+GWALVKDRA+A+KM+
Sbjct: 230 KSGDGVAVHDLAYYWPQYTPITSAAAHDIMLFTVSKCTGHAGTRLGWALVKDRAVAQKMS 289
Query: 62 KFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWSM 121
KF+ELNTIGVSKDSQ+RAAK+L A++DGY+R P + + RLF F RRKMV RW+
Sbjct: 290 KFIELNTIGVSKDSQLRAAKILKAITDGYDRAPAAGDDDDDS-SRLFHFARRKMVSRWAK 348
Query: 122 LRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTRS 181
LRAA AASGIF+LP+E G C F ET + P FAWLRC +E V+D G+LR KI++R
Sbjct: 349 LRAAVAASGIFTLPDELPGHCTFANETVSAYPPFAWLRCGKEGVDDLEGYLRERKIISRG 408
Query: 182 GAQFGADARYVRVSMLDRDDAFDIFINRLSSLK 214
G +FGAD R VR+SMLD D+AF IF++RL+++
Sbjct: 409 GGKFGADGRVVRISMLDTDEAFAIFVDRLAAMN 441
>Os01g0717700 EGF-like, alliinase domain containing protein
Length = 484
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 1 PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM 60
P + D AYYWP T I A D+MLFT SK +GHAG+R GWAL++D +A++
Sbjct: 267 PVLAGSSAIVDHAYYWPHLTHIPAPADEDVMLFTASKLSGHAGSRFGWALIRDEKVAKRA 326
Query: 61 TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS 120
+VE + +G S+D+Q+R K+L + + + +F FG M RW
Sbjct: 327 LSYVEQSIMGASRDTQLRMLKILKVILANLHGKED-----------IFAFGYDVMRSRWR 375
Query: 121 MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR 180
L A + S SL + +C + +PA+AW++C+ E+ DC L I++R
Sbjct: 376 RLNAVVSRSTRISLQKIPPQYCTYFNRIKEPSPAYAWVKCEWEEDVDCYETLLAAGIISR 435
Query: 181 SGAQFGADARYVRVSMLDRDDAFDIFINRLSSL 213
SG A+ARY R+S+L D FD+ + R++
Sbjct: 436 SGTLSEAEARYTRMSLLKAQDDFDVLLERITEF 468
>Os01g0717400 EGF-like, alliinase domain containing protein
Length = 485
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 1 PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM 60
P + D AYYWP T I A D+MLFT SK +GHAG+R GWALV+D +A +
Sbjct: 268 PILAGSSAIVDHAYYWPHLTHIPAPADEDVMLFTTSKLSGHAGSRFGWALVRDEKVASRA 327
Query: 61 TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS 120
++E +T+G S+++Q+R K+L + + + +F FG M RW
Sbjct: 328 ISYIEESTVGTSRETQLRVLKILKVILANLHGKED-----------IFAFGYDVMSSRWR 376
Query: 121 MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR 180
L A + S SL + +C + +PA+AW++C+ + +DC L I +
Sbjct: 377 RLNAVVSRSTRISLQKMPPQYCTYFNRIKEPSPAYAWVKCEWVEDDDCYETLLAAGINSL 436
Query: 181 SGAQFGADARYVRVSMLDRDDAFDIFINRLS 211
+G A RY R+S++ D FD+ + R++
Sbjct: 437 TGTVNEAGTRYTRLSLIKTQDDFDMLLERIT 467
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,999,183
Number of extensions: 263931
Number of successful extensions: 541
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 4
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)