Os01g0717700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF-like, alliinase domain containing protein.
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Os01g0717700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF-like, alliinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.08 | 0.482 | 12.7 | -0.525 | 1.36 | 0.835 | -1.68 | -8.58 | 0.213 | 15 | 26.75 | 5854 | -- | -- |
| 124.27 | 0.519 | 12.5 | 1.44 | 1.42 | 0.424 | -1.71 | -- | 0.578 | 14.8 | 3.226 | 30343 | -- | -- |
| 113.85 | 0.497 | 12.7 | -0.693 | 1.32 | 0.9 | -- | -8.98 | 0.186 | 14.7 | 27.16 | 5939 | -- | -- |
| 133.41 | 0.538 | 12.5 | 1.42 | 1.41 | 0.425 | -- | -- | 0.572 | 14.6 | 3.07 | 37037 | -- | -- |
| 207.59 | 0.671 | 12.9 | -2.06 | -- | 1.79 | -- | -16.2 | 0.0335 | -- | 28.5 | 6105 | -- | -- |
| 126.43 | 0.527 | 12.4 | 1.83 | 1.42 | -- | -1.7 | -- | 0.745 | 14.9 | -- | -- | -- | -- |
| 135.96 | 0.546 | 12.4 | 1.79 | 1.41 | -- | -- | -- | 0.735 | 14.7 | -- | -- | -- | -- |
| 205.75 | 0.671 | 12.5 | 1.4 | -- | 1.79 | -- | -- | 0.461 | -- | 6.145 | 47520 | -- | -- |
| 146.43 | 0.564 | 12.6 | -- | 1.43 | 1.38 | -- | -- | 0.123 | 14.6 | -3.593 | 47520 | -- | -- |
| 251.49 | 0.741 | 12.5 | 1.73 | -- | -- | -- | -- | 0.699 | -- | -- | -- | -- | -- |
| 220.11 | 0.694 | 12.5 | -- | 1.37 | -- | -- | -- | 0.536 | 14.6 | -- | -- | -- | -- |
| 254.51 | 0.745 | 12.6 | -- | -- | 2.24 | -- | -- | 0.255 | -- | 2.03 | 47520 | -- | -- |
| 330.16 | 0.848 | 12.5 | -- | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.13 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 15 |
| 2 | 103.29 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 13 |
| 3 | 103.41 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 17 |
| 4 | 103.63 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 11 |
| 21 | 105.06 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 23 | 105.31 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 24 | 105.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 27 | 105.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 37 | 105.97 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 38 | 106.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 41 | 106.13 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 59 | 106.67 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 80 | 107.01 | radiation | 10 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 106 | 107.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 110 | 107.34 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 114 | 107.37 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 117 | 107.39 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 144 | 107.49 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 147 | 107.50 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 157 | 107.52 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 160 | 107.54 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 194 | 107.64 | temperature | 20 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 202 | 107.67 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 211 | 107.74 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 222 | 107.79 | radiation | 20 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 227 | 107.81 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 228 | 107.81 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 233 | 107.83 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 262 | 107.92 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 295 | 107.95 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 304 | 107.99 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 332 | 108.05 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 344 | 108.07 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 358 | 108.10 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 9 |
| 381 | 108.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 391 | 108.15 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 13 |
| 416 | 108.19 | radiation | 10 | 43200 | < th | dose dependent | sin | 6 | NA |
| 423 | 108.22 | radiation | 30 | 43200 | > th | dose independent | sin | 18 | NA |
| 424 | 108.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 441 | 108.26 | temperature | 20 | 14400 | > th | dose dependent | sin | 9 | NA |
| 530 | 108.34 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 615 | 108.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 618 | 108.44 | radiation | 10 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 672 | 108.51 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 713 | 108.54 | temperature | 25 | 14400 | > th | dose independent | sin | 3 | NA |
| 718 | 108.55 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 847 | 108.59 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 988 | 108.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 15 |