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Os01g0717400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF-like, alliinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0491) R2 : 0.83
β1 : -0.185 (0.213) R2dD : 0.000442 R2D : 0.00242
β2 : 3.48 (0.132) R2dC : 0.312 R2C : 0.545
β3 : -6.53 (0.267) R2dE : 0.34 R2E : 0.47
β4 : -3.31 (0.581) R2dD*C : 0.0148 R2D*C : -0.00382
β5 : -8.43 (1.02) R2dD*E : 0.052 R2D*E : -0.0725
γ1 : 0.0136 (0.107) R2dN8 : 9.04e-06 R2N8 : 0.000315
σ : 0.893
deviance : 361.04
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C
peak time of C : 16.1
E
wheather : radiation
threshold : 1.428
memory length : 1550
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.5
open length of G : 18.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.04 0.893 11.9 -0.185 3.48 -6.53 -3.31 -8.43 0.0136 16.1 1.428 1550 11.5 18.5
408.12 0.941 11.9 -0.876 3.28 -5.67 -1.27 -- 0.0276 16.1 2.249 1580 11.5 18.5
387.15 0.916 11.9 -0.373 3.63 -6.21 -- -6.54 0.0061 16 1.416 1541 11.4 18.6
411.91 0.945 11.9 -0.912 3.3 -5.5 -- -- -0.0297 16.1 2.405 1576 11.6 18.4
656.66 1.19 11.9 -0.437 -- -5.27 -- 0.0414 0.618 -- 26.88 732 15.7 9.83
707.91 1.25 11.9 -0.276 4.92 -- -1.09 -- 0.508 14.9 -- -- -- --
711.93 1.25 11.9 -0.301 4.91 -- -- -- 0.501 14.9 -- -- -- --
617.33 1.16 11.8 -0.352 -- -5.88 -- -- 0.41 -- 6.855 726 14.2 10.5
429.08 0.965 11.9 -- 3.36 -5.21 -- -- 0.0755 16 2.962 1578 11.6 18.4
2103.68 2.14 11.9 -0.51 -- -- -- -- 0.374 -- -- -- -- --
714.31 1.25 11.8 -- 4.92 -- -- -- 0.534 14.9 -- -- -- --
615.62 1.16 11.8 -- -- -6.15 -- -- 0.424 -- 6.83 722 14.2 10.7
2110.55 2.14 11.9 -- -- -- -- -- 0.431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 400.50 humidity 90 43200 > th dose dependent rect. 21 3
9 404.32 humidity 90 43200 < th dose independent rect. 20 5
10 405.09 humidity 90 43200 < th dose independent rect. 19 7
13 405.41 humidity 90 43200 < th dose independent rect. 18 9
29 407.17 radiation 40 14400 < th dose dependent rect. 18 11
35 407.80 humidity 90 43200 > th dose independent rect. 21 3
43 408.46 humidity 90 43200 < th dose independent sin 14 NA
54 409.27 radiation 40 14400 < th dose dependent rect. 18 6
60 409.58 humidity 90 43200 > th dose independent rect. 18 8
76 410.16 humidity 90 43200 > th dose independent rect. 21 1
82 410.36 humidity 90 43200 < th dose independent rect. 21 1
112 411.16 humidity 90 43200 > th dose dependent sin 15 NA
140 412.14 humidity 90 43200 > th dose independent rect. 17 13
151 412.33 humidity 90 43200 > th dose independent sin 14 NA
294 415.21 radiation 20 14400 > th dose dependent rect. 16 15
496 419.00 humidity 90 43200 > th dose dependent rect. 18 21
586 420.18 humidity 90 43200 > th dose dependent no NA NA
595 420.34 wind 5 43200 < th dose independent rect. 11 1
638 421.09 humidity 90 43200 > th dose dependent rect. 2 23
653 421.29 radiation 20 14400 > th dose dependent rect. 16 1
737 422.33 wind 5 43200 > th dose independent rect. 11 1
750 422.63 humidity 90 43200 < th dose independent no NA NA
777 423.28 radiation 1 1440 < th dose dependent rect. 11 19
779 423.32 humidity 90 43200 < th dose independent rect. 18 1
790 423.47 temperature 25 1440 > th dose dependent rect. 12 5
795 423.57 temperature 25 1440 > th dose dependent rect. 15 2
796 423.58 humidity 90 43200 < th dose independent rect. 23 23
804 423.70 radiation 40 14400 < th dose dependent rect. 17 13
806 423.74 humidity 90 43200 > th dose independent no NA NA
835 424.05 radiation 1 43200 < th dose dependent rect. 6 23
841 424.09 radiation 1 14400 > th dose dependent rect. 17 12
869 424.67 radiation 1 43200 < th dose dependent rect. 7 16
870 424.68 radiation 1 43200 < th dose dependent rect. 7 12
899 424.94 humidity 80 43200 < th dose independent rect. 12 1
916 425.05 humidity 90 43200 > th dose independent rect. 4 23
918 425.08 humidity 90 43200 < th dose independent rect. 2 23
920 425.09 humidity 90 43200 > th dose independent rect. 23 23
951 425.46 radiation 1 14400 > th dose dependent rect. 17 2
979 425.84 humidity 90 43200 > th dose independent rect. 1 23