BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0160100 Os01g0160100|AK069905
(597 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0160100 Similar to Pyruvate decarboxylase isozyme 2 (E... 1039 0.0
Os05g0469600 Similar to Pyruvate decarboxylase (Fragment) 886 0.0
AK100501 885 0.0
Os03g0293500 Similar to Pyruvate decarboxylase isozyme 3 (E... 879 0.0
Os07g0693100 Similar to Pyruvate decarboxylase isozyme 3 (E... 840 0.0
Os11g0602250 135 6e-32
>Os01g0160100 Similar to Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)
(Fragment)
Length = 597
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/597 (86%), Positives = 515/597 (86%)
Query: 1 MDTTIGXXXXXXXXXXXXXXXXXXXXXXTLGRHLARRLAEVGARDVFTVPGDFNLTXXXX 60
MDTTIG TLGRHLARRLAEVGARDVFTVPGDFNLT
Sbjct: 1 MDTTIGSVPTASDAAAPAPAANSAPREATLGRHLARRLAEVGARDVFTVPGDFNLTLLDE 60
Query: 61 XXXXXXXXXXXVRLVGCCNELNXXXXXXXXXXXXXXXXXXXXXTFTVGGLSAINAVAGAF 120
VRLVGCCNELN TFTVGGLSAINAVAGAF
Sbjct: 61 LEAEAGAGHGGVRLVGCCNELNAAYAADGYARARGGGVGACAVTFTVGGLSAINAVAGAF 120
Query: 121 SENLPVVCIVGGPNSNDYGSNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQI 180
SENLPVVCIVGGPNSNDYGSNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQI
Sbjct: 121 SENLPVVCIVGGPNSNDYGSNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQI 180
Query: 181 DAAISTAIKESKPVYISISCNLPSIPHPTFSRHPVPFFLSPRLSNQMNLEAAVETAAAFL 240
DAAISTAIKESKPVYISISCNLPSIPHPTFSRHPVPFFLSPRLSNQMNLEAAVETAAAFL
Sbjct: 181 DAAISTAIKESKPVYISISCNLPSIPHPTFSRHPVPFFLSPRLSNQMNLEAAVETAAAFL 240
Query: 241 NKAVKPVLVGGPKMRVAKACKSFVELADACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVS 300
NKAVKPVLVGGPKMRVAKACKSFVELADACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVS
Sbjct: 241 NKAVKPVLVGGPKMRVAKACKSFVELADACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVS 300
Query: 301 TPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMK 360
TPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMK
Sbjct: 301 TPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMK 360
Query: 361 DFLHALSARLKKNTAAYENYRRIYVXXXXXXXXXXXXXXRVNVLFQHIQKMLSANSAVIA 420
DFLHALSARLKKNTAAYENYRRIYV RVNVLFQHIQKMLSANSAVIA
Sbjct: 361 DFLHALSARLKKNTAAYENYRRIYVPPGEPPLSEPGEPLRVNVLFQHIQKMLSANSAVIA 420
Query: 421 ETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAKAAKDKRVIACIGDGSFQVT 480
ETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAKAAKDKRVIACIGDGSFQVT
Sbjct: 421 ETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAKAAKDKRVIACIGDGSFQVT 480
Query: 481 AQEVSTMLRWGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTA 540
AQEVSTMLRWGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTA
Sbjct: 481 AQEVSTMLRWGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTA 540
Query: 541 KVRTXXXXXXXXXXAQGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
KVRT AQGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 541 KVRTEEELKEAIEEAQGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
>Os05g0469600 Similar to Pyruvate decarboxylase (Fragment)
Length = 605
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/569 (73%), Positives = 475/569 (83%), Gaps = 7/569 (1%)
Query: 29 TLGRHLARRLAEVGARDVFTVPGDFNLTXXXXXXXXXXXXXXXVRLVGCCNELNXXXXXX 88
TLGRHLARRL ++GA DVF VPGDFNLT ++L+GCCNELN
Sbjct: 44 TLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPG-----LKLIGCCNELNAGYAAD 98
Query: 89 XXXXXXXXXXXXXXXTFTVGGLSAINAVAGAFSENLPVVCIVGGPNSNDYGSNRILHHTI 148
TFTVGGLS +NA+AGA+SENLPV+CIVGGPNSNDYG+NRILHHTI
Sbjct: 99 GYARARGVGACAV--TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI 156
Query: 149 GLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDAAISTAIKESKPVYISISCNLPSIPHP 208
GLPDF+QELRCFQT+TCYQAV+NNL+DAHEQID AI+TA++ESKPVYIS+ CNL + HP
Sbjct: 157 GLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATALRESKPVYISVGCNLAGLSHP 216
Query: 209 TFSRHPVPFFLSPRLSNQMNLEAAVETAAAFLNKAVKPVLVGGPKMRVAKACKSFVELAD 268
TFSR PVP F+SPRLSN+ NLE AVE AA FLNKAVKPV+VGGPK+RVAKA K+F +A+
Sbjct: 217 TFSREPVPLFISPRLSNKANLEYAVEAAADFLNKAVKPVMVGGPKIRVAKAKKAFAGIAE 276
Query: 269 ACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVG 328
+ GYP AVMPSAKGLVPEHHPRFIGTYWGAVST FCAEIVESADAYLFAGPIFNDYSSVG
Sbjct: 277 SSGYPFAVMPSAKGLVPEHHPRFIGTYWGAVSTTFCAEIVESADAYLFAGPIFNDYSSVG 336
Query: 329 YSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMKDFLHALSARLKKNTAAYENYRRIYVXXX 388
YSLLLK+EKA+IVQPDRVV+G+GPAFGC+LM +FL AL+ RL +NT AY+NYRRI++
Sbjct: 337 YSLLLKREKAVIVQPDRVVVGNGPAFGCILMTEFLDALAKRLDRNTTAYDNYRRIFIPDR 396
Query: 389 XXXXXXXXXXXRVNVLFQHIQKMLSANSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 448
RVN+LF+HI++MLS ++AVIAETGDSWFNCQKL+LPEGCGYEFQMQYGS
Sbjct: 397 EPPNGQPDEPLRVNILFKHIKEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGS 456
Query: 449 IGWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRWGQKSIIFLINNGGYTIEV 508
IGWSVGATLGYA+AAKDKRVI+CIGDGSFQ+TAQ+VSTMLR GQKSIIFLINNGGYTIEV
Sbjct: 457 IGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEV 516
Query: 509 EIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTAKVRTXXXXXXXXXXAQGPKKDCLCFIEV 568
EIHDGPYNVIKNW+YTG+++A HN +G C+T KVRT A G KKDCLCFIE+
Sbjct: 517 EIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEI 576
Query: 569 IVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
IVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 577 IVHKDDTSKELLEWGSRVSAANSRPPNPQ 605
>AK100501
Length = 605
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/569 (73%), Positives = 475/569 (83%), Gaps = 7/569 (1%)
Query: 29 TLGRHLARRLAEVGARDVFTVPGDFNLTXXXXXXXXXXXXXXXVRLVGCCNELNXXXXXX 88
TLGRHLARRL ++GA DVF VPGDFNLT ++L+GCCNELN
Sbjct: 44 TLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPG-----LKLIGCCNELNAGYAAD 98
Query: 89 XXXXXXXXXXXXXXXTFTVGGLSAINAVAGAFSENLPVVCIVGGPNSNDYGSNRILHHTI 148
TFTVGGLS +NA+AGA+SENLPV+CIVGGPNSNDYG+NRILHHTI
Sbjct: 99 GYARARGVGACAV--TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI 156
Query: 149 GLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDAAISTAIKESKPVYISISCNLPSIPHP 208
GLPDF+QELRCFQT+TCYQAV+NNL+DAHEQID AI+TA++ESKPVYIS+ CNL + HP
Sbjct: 157 GLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATALRESKPVYISVGCNLAGLSHP 216
Query: 209 TFSRHPVPFFLSPRLSNQMNLEAAVETAAAFLNKAVKPVLVGGPKMRVAKACKSFVELAD 268
TFSR PVP F+SPRLSN+ NLE AVE AA FLNKAVKPV+VGGPK+RVAKA K+F +A+
Sbjct: 217 TFSREPVPLFISPRLSNKANLEHAVEAAADFLNKAVKPVMVGGPKIRVAKAKKAFAGIAE 276
Query: 269 ACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVG 328
+ GYP AVMPSAKGLVPEHHPRFIGTYWGAVST FCAEIVESADAYLFAGPIFNDYSSVG
Sbjct: 277 SSGYPFAVMPSAKGLVPEHHPRFIGTYWGAVSTTFCAEIVESADAYLFAGPIFNDYSSVG 336
Query: 329 YSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMKDFLHALSARLKKNTAAYENYRRIYVXXX 388
YSLLLK+EKA+IVQPDRVV+G+GPAFGC+LM +FL AL+ RL +NT AY+NYRRI++
Sbjct: 337 YSLLLKREKAVIVQPDRVVVGNGPAFGCILMTEFLDALAKRLDRNTTAYDNYRRIFIPDR 396
Query: 389 XXXXXXXXXXXRVNVLFQHIQKMLSANSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 448
RVN+LF+HI+++LS ++AVIAETGDSWFNCQKL+LPEGCGYEFQMQYGS
Sbjct: 397 EPPNGQPDEPLRVNILFKHIKELLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGS 456
Query: 449 IGWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRWGQKSIIFLINNGGYTIEV 508
IGWSVGATLGYA+AAKDKRVI+CIGDGSFQ+TAQ+VSTMLR GQKSIIFLINNGGYTIEV
Sbjct: 457 IGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEV 516
Query: 509 EIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTAKVRTXXXXXXXXXXAQGPKKDCLCFIEV 568
EIHDGPYNVIKNW+YTG+++A HN +G C+T KVRT A G KKDCLCFIE+
Sbjct: 517 EIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEI 576
Query: 569 IVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
IVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 577 IVHKDDTSKELLEWGSRVSAANSRPPNPQ 605
>Os03g0293500 Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC)
(Fragment)
Length = 605
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/569 (74%), Positives = 470/569 (82%), Gaps = 8/569 (1%)
Query: 29 TLGRHLARRLAEVGARDVFTVPGDFNLTXXXXXXXXXXXXXXXVRLVGCCNELNXXXXXX 88
+LGRHLARRL +VG DVF VPGDFNLT +RLVGCCNELN
Sbjct: 45 SLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPG-----LRLVGCCNELNAGYAAD 99
Query: 89 XXXXXXXXXXXXXXXTFTVGGLSAINAVAGAFSENLPVVCIVGGPNSNDYGSNRILHHTI 148
TFTVGGLS +NA+AGA+SENLPV+CI GGPNSNDYG+NRILHHTI
Sbjct: 100 GYARARGVGACAV--TFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTI 157
Query: 149 GLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDAAISTAIKESKPVYISISCNLPSIPHP 208
GLPDF+QELRCFQTVTC+QAVV NLEDAHEQID AI+TA++ESKPVY+SISCNLP +PHP
Sbjct: 158 GLPDFSQELRCFQTVTCHQAVVTNLEDAHEQIDTAIATALRESKPVYLSISCNLPGLPHP 217
Query: 209 TFSRHPVPFFLSPRLSNQMNLEAAVETAAAFLNKAVKPVLVGGPKMRVAKACKSFVELAD 268
TFSR PVPFFL+PRLSN+M LEAAVE FLNKAVKPVLVGGPK+RVAKA K+FV+L D
Sbjct: 218 TFSRDPVPFFLAPRLSNKMGLEAAVEATVEFLNKAVKPVLVGGPKLRVAKAGKAFVDLVD 277
Query: 269 ACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVG 328
A GY AVMPSAKGLVPE HP FIGTYWGAVST FCAEIVESADAYLFAGPIFNDYSSVG
Sbjct: 278 ASGYAYAVMPSAKGLVPETHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVG 337
Query: 329 YSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMKDFLHALSARLKKNTAAYENYRRIYVXXX 388
YS LLKK+KAIIVQP+RV++G+GPAFGCV+MK+FL L+ R+ KNT AYENY+RI+V
Sbjct: 338 YSFLLKKDKAIIVQPERVIVGNGPAFGCVMMKEFLSELAKRVNKNTTAYENYKRIFVPEG 397
Query: 389 XXXXXXXXXXXRVNVLFQHIQKMLSANSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 448
RVNVLF+H+QKML+++SAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS
Sbjct: 398 QPLESEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 457
Query: 449 IGWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRWGQKSIIFLINNGGYTIEV 508
IGWSVGA LGYA+ AKDKRVIACIGDGSFQVTAQ+VSTM+R Q SIIFLINNGGYTIEV
Sbjct: 458 IGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEV 517
Query: 509 EIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTAKVRTXXXXXXXXXXAQGPKKDCLCFIEV 568
EIHDGPYNVIKNWNYTG+V+A HNGEGKC+T+KV+ A G +KDCLCFIEV
Sbjct: 518 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALG-EKDCLCFIEV 576
Query: 569 IVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
I HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 577 IAHKDDTSKELLEWGSRVSAANSRPPNPQ 605
>Os07g0693100 Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC)
Length = 587
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/571 (70%), Positives = 460/571 (80%), Gaps = 10/571 (1%)
Query: 29 TLGRHLARRLAEVGARDVFTVPGDFNLTXXXXXXXXXXXXXXXVRLVGCCNELNXXXXXX 88
TLG HLARRL +VG DVF VPGDFNLT +R+VGCCNELN
Sbjct: 25 TLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPG-----LRVVGCCNELNAGYAAD 79
Query: 89 XXXXXXXXXXXXXXXTFTVGGLSAINAVAGAFSENLPVVCIVGGPNSNDYGSNRILHHTI 148
TFTVGGLS +NA+ GA+SENLP++CIVGGPNSNDYG+NRILHHTI
Sbjct: 80 GYARARGVGACAV--TFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTI 137
Query: 149 GLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDAAISTAIKESKPVYISISCNLPSIPHP 208
GLPDF+QELRCFQ +TCYQAVVNNL+DAH+QID AISTAI+ESKPVYIS+SCNLP++PHP
Sbjct: 138 GLPDFSQELRCFQPLTCYQAVVNNLDDAHDQIDRAISTAIRESKPVYISVSCNLPAVPHP 197
Query: 209 TFSRHPVPFFLSPRLSNQMNLEAAVETAAAFLNKAVKPVLVGGPKMRVAKACKSFVELAD 268
TFSR PVP+FLSPRLSNQ +L AA++ AFL+KAVKPVLV GPK+RVAKA +FV+LAD
Sbjct: 198 TFSRDPVPYFLSPRLSNQASLHAALDATLAFLDKAVKPVLVAGPKLRVAKAGGAFVDLAD 257
Query: 269 ACGYPVAVMPSAKGLVPEHHPRFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVG 328
A G+ VA MPSAKGLVPE PRFIGTYWGAVST FCAEIVESADAYLFAGPIFNDYSSVG
Sbjct: 258 ASGHAVAAMPSAKGLVPETLPRFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVG 317
Query: 329 YSLLLKKEKAIIVQPDRVVIGHGPAFGCVLMKDFLHALSARLKKNTAAYENYRRIYVXXX 388
YS LLKKEKA++VQPDRV +G+GPAFGCV+M+DFL L+ R++KNT A++NY+RI+V
Sbjct: 318 YSCLLKKEKAVVVQPDRVTVGNGPAFGCVMMRDFLSELAKRVRKNTTAFDNYKRIFVPEG 377
Query: 389 XXXXXXXXXXXRVNVLFQHIQKMLSANS--AVIAETGDSWFNCQKLKLPEGCGYEFQMQY 446
RVNVLF+HIQ+M+ AV+AETGDSWFNCQKL+LPEGCGYEFQMQY
Sbjct: 378 QLPECEAGEALRVNVLFKHIQRMIGGTEIGAVMAETGDSWFNCQKLRLPEGCGYEFQMQY 437
Query: 447 GSIGWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRWGQKSIIFLINNGGYTI 506
GSIGWSVGA LGYA+A + KRV+ACIGDGSFQVTAQ+VSTMLR GQ+SIIFLINNGGYTI
Sbjct: 438 GSIGWSVGALLGYAQAVQ-KRVVACIGDGSFQVTAQDVSTMLRCGQRSIIFLINNGGYTI 496
Query: 507 EVEIHDGPYNVIKNWNYTGVVEAFHNGEGKCYTAKVRTXXXXXXXXXXAQGPKKDCLCFI 566
EVEIHDGPYNVIKNW+Y G+V A HNGEG+C+ +VR A G K D LCFI
Sbjct: 497 EVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFI 556
Query: 567 EVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 597
EV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 557 EVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587
>Os11g0602250
Length = 111
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 76/93 (81%)
Query: 180 IDAAISTAIKESKPVYISISCNLPSIPHPTFSRHPVPFFLSPRLSNQMNLEAAVETAAAF 239
ID AI+TA+ ESKPVYIS+ CNL + HPTFSR PVP F+SPRLSN+ NLE AVE AA F
Sbjct: 19 IDTAIATALSESKPVYISVGCNLAGLSHPTFSREPVPLFISPRLSNKANLEYAVEAAADF 78
Query: 240 LNKAVKPVLVGGPKMRVAKACKSFVELADACGY 272
LNKAVKP++VGGPK RVAKA K+F +A++ GY
Sbjct: 79 LNKAVKPMMVGGPKFRVAKAKKAFAGIAESSGY 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,723,960
Number of extensions: 688723
Number of successful extensions: 1437
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1426
Number of HSP's successfully gapped: 6
Length of query: 597
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 490
Effective length of database: 11,448,903
Effective search space: 5609962470
Effective search space used: 5609962470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)