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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0293500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0261) R2 : 0.677
β1 : 1.14 (0.0955) R2dD : 0.102 R2D : 0.0508
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.57 (0.0528) R2dE : 0.597 R2E : 0.57
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.194 (0.0558) R2dN8 : 0.017 R2N8 : 0.0117
σ : 0.487
deviance : 109.43
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.06
memory length : 676
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 2.82

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.16 0.48 13.2 0.968 0.292 1.72 2.45 1.79 0.197 13.9 29.4 694 17.1 2.93
106.64 0.481 13.2 1.11 0.296 1.68 0.708 -- 0.208 15.6 29.33 698 17.1 2.9
109.02 0.486 13.2 1.13 0.456 1.79 -- 0.118 0.162 14.3 29.38 695 17.2 2.95
107.85 0.484 13.2 1.13 0.292 1.69 -- -- 0.202 15.2 29.4 697 17.2 2.87
112.11 0.493 13.2 1.09 -- 1.7 -- -0.221 0.23 -- 29.1 676 17.2 2.8
159.5 0.592 13.2 0.925 1.53 -- -0.544 -- 0.32 23.8 -- -- -- --
160.77 0.594 13.2 0.947 1.53 -- -- -- 0.323 23.8 -- -- -- --
109.43 0.487 13.2 1.14 -- 1.57 -- -- 0.194 -- 29.06 676 17.2 2.82
141.38 0.554 13.2 -- 0.292 1.68 -- -- 0.184 15.4 29.4 692 17.2 2.79
308.77 0.821 13.2 0.992 -- -- -- -- 0.342 -- -- -- -- --
184.4 0.635 13.2 -- 1.55 -- -- -- 0.218 23.8 -- -- -- --
142.86 0.557 13.2 -- -- 1.57 -- -- 0.17 -- 29.4 673 17.3 2.68
334.74 0.854 13.2 -- -- -- -- -- 0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.90 temperature 30.0 720 < th dose independent rect. 17 3
3 113.09 humidity 60.0 270 > th dose dependent rect. 19 1
8 115.75 temperature 30.0 270 < th dose dependent rect. 19 1
9 115.87 temperature 30.0 720 < th dose independent rect. 17 10
14 116.19 temperature 30.0 720 < th dose independent rect. 17 12
15 116.36 humidity 70.0 720 > th dose independent rect. 17 3
26 118.05 radiation 1.0 270 < th dose dependent rect. 11 9
33 118.32 temperature 30.0 90 < th dose dependent rect. 18 5
46 119.35 precipitation 0.1 270 < th dose independent rect. 20 23
47 119.35 precipitation 0.1 270 < th dose dependent rect. 20 23
54 119.79 humidity 60.0 90 > th dose dependent rect. 18 5
59 119.98 atmosphere 995.0 270 > th dose dependent rect. 19 1
66 120.33 temperature 25.0 90 < th dose independent rect. 18 5
67 120.50 atmosphere 1000.0 270 > th dose independent rect. 19 1
71 120.86 radiation 1.0 270 < th dose independent rect. 11 9
98 122.03 humidity 70.0 720 > th dose independent rect. 17 12
121 122.90 humidity 80.0 90 > th dose independent rect. 18 5
128 123.03 temperature 15.0 270 > th dose independent rect. 20 23
139 123.34 radiation 1.0 270 < th dose independent sin 21 NA
154 123.53 temperature 15.0 270 > th dose independent rect. 19 1
156 123.54 radiation 1.0 270 < th dose dependent sin 22 NA
163 123.67 radiation 1.0 90 < th dose dependent sin 16 NA
172 123.77 wind 1.0 270 > th dose independent rect. 19 1
174 123.81 atmosphere 1000.0 30 > th dose independent rect. 19 8
176 123.84 wind 9.0 270 < th dose independent rect. 20 23
177 123.87 humidity 80.0 10 > th dose independent rect. 19 2
182 123.95 humidity 50.0 270 > th dose independent rect. 19 1
184 123.95 atmosphere 1015.0 270 < th dose independent rect. 19 1
185 123.95 radiation 1.0 270 < th dose independent rect. 19 1
198 123.98 wind 9.0 270 < th dose independent rect. 19 1
226 124.48 wind 9.0 270 < th dose dependent rect. 19 1
238 124.64 radiation 1.0 720 < th dose independent rect. 17 10
239 124.69 temperature 25.0 720 > th dose dependent rect. 14 10
253 124.87 atmosphere 1000.0 90 > th dose independent rect. 19 4
287 125.38 radiation 10.0 720 < th dose dependent sin 15 NA
330 125.81 temperature 25.0 720 > th dose dependent sin 15 NA
349 126.02 radiation 10.0 720 < th dose dependent rect. 14 16
350 126.03 temperature 30.0 720 < th dose independent sin 13 NA
379 126.31 radiation 10.0 720 < th dose dependent rect. 15 12
477 127.19 atmosphere 995.0 90 > th dose dependent rect. 19 4
505 127.49 radiation 1.0 720 < th dose independent rect. 14 13
515 127.60 temperature 15.0 1440 > th dose independent rect. 20 3
525 127.67 precipitation 0.1 90 < th dose independent rect. 23 20
528 127.67 precipitation 0.1 90 < th dose dependent rect. 23 20
529 127.69 radiation 1.0 90 < th dose independent sin 16 NA
543 127.77 temperature 30.0 1440 < th dose independent rect. 20 4
547 127.77 humidity 50.0 1440 > th dose independent rect. 20 4
553 127.77 atmosphere 995.0 1440 > th dose independent rect. 20 4
554 127.77 radiation 1.0 1440 < th dose independent rect. 20 4
576 127.77 temperature 10.0 1440 > th dose independent rect. 24 20
582 127.79 radiation 30.0 1440 < th dose dependent rect. 20 4
648 128.17 temperature 30.0 720 > th dose independent rect. 16 3
700 128.44 radiation 1.0 720 < th dose independent sin 15 NA
721 128.62 humidity 70.0 4320 > th dose independent rect. 20 2
728 128.65 temperature 30.0 1440 < th dose independent rect. 20 2
732 128.65 humidity 50.0 1440 > th dose independent rect. 20 2
738 128.65 atmosphere 995.0 1440 > th dose independent rect. 20 2
739 128.65 radiation 1.0 1440 < th dose independent rect. 20 2
759 128.65 temperature 10.0 1440 > th dose independent rect. 22 22
763 128.66 radiation 40.0 4320 < th dose dependent rect. 20 2
768 128.69 atmosphere 1015.0 30 < th dose independent rect. 23 20
773 128.70 radiation 1.0 270 > th dose independent sin 21 NA
791 128.82 humidity 50.0 90 > th dose dependent rect. 18 9
808 128.87 humidity 70.0 720 > th dose independent sin 14 NA
818 128.93 radiation 1.0 90 < th dose dependent rect. 5 22
836 129.10 precipitation 0.1 30 < th dose independent rect. 3 16
839 129.10 atmosphere 995.0 30 > th dose dependent rect. 19 8
840 129.10 precipitation 0.1 30 < th dose dependent rect. 3 16
870 129.27 temperature 30.0 720 > th dose independent sin 13 NA
995 129.79 temperature 10.0 720 > th dose dependent rect. 13 11