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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0469600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pyruvate decarboxylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.77 (0.0433) R2 : 0.353
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.36 (0.112) R2dC : 0.208 R2C : 0.193
β3 : 1.3 (0.13) R2dE : 0.152 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.459 (0.0937) R2dN8 : 0.0479 R2N8 : -0.00753
σ : 0.806
deviance : 299.41
__
_____
C
peak time of C : 6.22
E
wheather : radiation
threshold : 31.67
memory length : 1295
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
294.04 0.806 5.78 -0.411 1.36 1.31 0.625 0.101 -0.51 6.26 30.85 1295 -- --
294.06 0.799 5.78 -0.427 1.36 1.31 0.623 -- -0.514 6.25 30.57 1295 -- --
295 0.8 5.78 -0.405 1.37 1.31 -- 0.0903 -0.512 6.22 30.83 1295 -- --
295.01 0.8 5.78 -0.417 1.37 1.31 -- -- -0.516 6.22 30.77 1295 -- --
390.24 0.92 5.8 -0.359 -- 1.32 -- 0.193 -0.485 -- 30.83 1353 -- --
359.03 0.888 5.72 -0.253 1.38 -- 0.578 -- -0.242 5.59 -- -- -- --
359.85 0.888 5.72 -0.25 1.38 -- -- -- -0.244 5.56 -- -- -- --
390.31 0.92 5.81 -0.386 -- 1.32 -- -- -0.498 -- 30.83 1353 -- --
299.41 0.806 5.77 -- 1.36 1.3 -- -- -0.459 6.22 31.67 1295 -- --
458.92 1 5.74 -0.205 -- -- -- -- -0.211 -- -- -- -- --
361.5 0.889 5.72 -- 1.38 -- -- -- -0.216 5.57 -- -- -- --
394.05 0.925 5.8 -- -- 1.31 -- -- -0.446 -- 31.7 1353 -- --
460.04 1 5.74 -- -- -- -- -- -0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.35 wind 9 43200 > th dose dependent rect. 12 1
2 279.70 wind 9 43200 < th dose independent rect. 10 4
4 281.40 wind 9 43200 > th dose independent rect. 10 4
6 282.27 wind 7 43200 > th dose dependent rect. 11 3
15 284.53 wind 9 43200 > th dose independent rect. 12 1
19 285.14 radiation 20 1440 < th dose independent rect. 16 17
27 285.90 wind 9 43200 > th dose dependent rect. 11 7
28 285.92 radiation 30 1440 < th dose dependent rect. 17 16
33 286.22 radiation 1 1440 > th dose dependent rect. 17 16
36 286.49 wind 9 43200 > th dose independent rect. 15 1
40 286.75 wind 7 43200 < th dose dependent rect. 22 9
46 286.89 wind 9 43200 < th dose independent rect. 15 1
47 286.94 wind 9 43200 < th dose independent rect. 4 10
49 287.04 radiation 30 1440 < th dose dependent rect. 24 9
58 287.11 radiation 30 1440 < th dose dependent rect. 2 7
59 287.13 radiation 30 1440 < th dose dependent rect. 5 4
64 287.17 wind 9 43200 < th dose independent rect. 4 12
74 287.27 radiation 1 1440 > th dose dependent rect. 5 4
100 287.41 wind 9 43200 < th dose independent rect. 1 15
106 287.57 wind 9 43200 > th dose independent rect. 4 12
108 287.61 wind 9 43200 < th dose independent rect. 21 19
112 287.70 wind 9 43200 > th dose independent rect. 21 19
113 287.71 wind 9 43200 > th dose independent rect. 1 15
118 287.80 wind 3 43200 > th dose independent rect. 1 3
139 288.21 wind 3 43200 > th dose independent rect. 23 8
141 288.29 wind 9 43200 < th dose independent rect. 12 1
151 288.48 wind 1 43200 > th dose dependent rect. 22 9
174 288.74 wind 3 43200 < th dose independent rect. 1 3
182 288.88 radiation 1 1440 > th dose dependent sin 11 NA
185 288.95 radiation 40 1440 < th dose dependent sin 11 NA
221 289.19 wind 3 43200 < th dose independent rect. 23 8
279 289.51 wind 3 43200 > th dose independent rect. 1 6
293 289.59 wind 3 43200 > th dose independent rect. 1 13
302 289.62 wind 9 43200 < th dose independent sin 2 NA
312 289.67 radiation 20 1440 < th dose independent rect. 6 3
316 289.70 wind 9 43200 < th dose dependent rect. 22 16
321 289.74 wind 3 43200 < th dose independent rect. 1 6
324 289.75 radiation 20 1440 < th dose independent rect. 24 9
329 289.78 radiation 20 1440 < th dose independent rect. 2 7
333 289.79 radiation 20 1440 < th dose independent rect. 19 14
353 289.89 wind 3 43200 > th dose independent rect. 23 15
398 290.11 radiation 20 1440 < th dose independent sin 11 NA
400 290.13 humidity 50 4320 > th dose independent rect. 14 13
402 290.16 humidity 50 4320 > th dose independent sin 13 NA
406 290.21 humidity 50 4320 > th dose independent rect. 14 6
408 290.21 wind 9 43200 < th dose dependent rect. 1 14
409 290.22 wind 9 43200 > th dose independent sin 1 NA
412 290.22 wind 1 43200 > th dose dependent rect. 23 16
416 290.24 humidity 50 4320 > th dose independent rect. 14 4
419 290.25 humidity 50 4320 > th dose independent rect. 14 11
429 290.31 humidity 50 4320 > th dose independent rect. 14 19
430 290.31 wind 1 43200 > th dose dependent rect. 1 14
460 290.51 wind 3 43200 < th dose independent rect. 1 13
474 290.57 humidity 70 1440 < th dose independent rect. 18 18
481 290.65 wind 3 43200 < th dose independent rect. 2 1
506 290.87 humidity 70 1440 > th dose independent rect. 18 18
518 290.97 wind 3 43200 < th dose independent rect. 23 15
521 290.99 humidity 50 4320 > th dose independent rect. 15 2
571 291.32 wind 1 270 < th dose independent rect. 4 1
612 291.53 wind 1 43200 < th dose dependent rect. 23 8
618 291.56 wind 3 43200 > th dose independent sin 7 NA
624 291.57 humidity 80 1440 > th dose independent rect. 7 2
670 291.73 wind 9 43200 > th dose independent rect. 10 20
677 291.77 wind 9 43200 < th dose dependent rect. 5 2
681 291.80 wind 9 43200 < th dose dependent sin 5 NA
682 291.81 wind 9 43200 < th dose dependent sin 9 NA
689 291.84 wind 9 43200 > th dose dependent rect. 14 2
727 292.06 wind 9 43200 < th dose independent rect. 10 20
733 292.12 wind 3 43200 < th dose independent sin 7 NA
742 292.18 wind 1 43200 > th dose dependent sin 5 NA
755 292.24 wind 5 43200 < th dose dependent rect. 1 2
758 292.29 wind 1 43200 > th dose dependent rect. 5 2
774 292.37 wind 9 43200 > th dose independent rect. 10 13
794 292.50 wind 1 43200 > th dose dependent sin 9 NA
800 292.55 wind 7 43200 > th dose dependent rect. 3 13
803 292.56 wind 9 43200 > th dose independent rect. 10 16
809 292.58 wind 7 43200 > th dose dependent rect. 1 15
813 292.60 radiation 20 1440 > th dose independent rect. 16 17
817 292.62 wind 9 43200 < th dose independent rect. 10 13
855 292.78 wind 1 43200 < th dose dependent rect. 23 12
873 292.87 wind 9 43200 < th dose dependent rect. 1 1
888 292.91 wind 7 43200 > th dose dependent rect. 21 19
909 293.03 wind 9 43200 < th dose independent rect. 10 16
932 293.12 humidity 80 1440 < th dose independent rect. 7 3
960 293.26 wind 3 43200 > th dose independent rect. 5 2
1000 293.46 wind 3 43200 < th dose independent rect. 5 1