BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0159000 Os01g0159000|AK106273
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0159000 Conserved hypothetical protein 402 e-112
AK106334 401 e-112
Os05g0560200 Conserved hypothetical protein 88 6e-18
Os01g0306400 Conserved hypothetical protein 83 2e-16
>Os01g0159000 Conserved hypothetical protein
Length = 269
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/259 (78%), Positives = 204/259 (78%)
Query: 11 RNGNHVPAPSGESFAKFFECWISEQXXXXXXXXXXXXXXXXXXXXXXXXELHRLVNRVLG 70
RNGNHVPAPSGESFAKFFECWISEQ ELHRLVNRVLG
Sbjct: 11 RNGNHVPAPSGESFAKFFECWISEQSRDLAALRSAASAATNPAAPPDDAELHRLVNRVLG 70
Query: 71 HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL 130
HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL
Sbjct: 71 HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL 130
Query: 131 PVFXXXXXXXXXXXXXXSAEQLQAADQLQRITVSKEREIENAAASAQESLATVKMVXXXX 190
PVF SAEQLQAADQLQRITVSKEREIENAAASAQESLATVKMV
Sbjct: 131 PVFLAGGGLGAGDLGDLSAEQLQAADQLQRITVSKEREIENAAASAQESLATVKMVELAG 190
Query: 191 XXXXXXXXXXXXXRSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA 250
RSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA
Sbjct: 191 GGGMDAEGMEMEMRSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA 250
Query: 251 VHEFGRRKDGDGAASPPPA 269
VHEFGRRKDGDGAASPPPA
Sbjct: 251 VHEFGRRKDGDGAASPPPA 269
>AK106334
Length = 269
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/259 (78%), Positives = 204/259 (78%)
Query: 11 RNGNHVPAPSGESFAKFFECWISEQXXXXXXXXXXXXXXXXXXXXXXXXELHRLVNRVLG 70
RNGNHVPAPSGESFAKFFECWISEQ ELHRLVNRVLG
Sbjct: 11 RNGNHVPAPSGESFAKFFECWISEQSRDLAALRSAASAATNPAAPPDDAELHRLVNRVLG 70
Query: 71 HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL 130
HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL
Sbjct: 71 HYEHYYRTKSAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQL 130
Query: 131 PVFXXXXXXXXXXXXXXSAEQLQAADQLQRITVSKEREIENAAASAQESLATVKMVXXXX 190
PVF SAEQLQAADQLQRITVSKERE+ENAAASAQESLATVKMV
Sbjct: 131 PVFLAGGGLGAGDLGDLSAEQLQAADQLQRITVSKEREVENAAASAQESLATVKMVELAG 190
Query: 191 XXXXXXXXXXXXXRSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA 250
RSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA
Sbjct: 191 GGGMDAEGMEMEMRSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLA 250
Query: 251 VHEFGRRKDGDGAASPPPA 269
VHEFGRRKDGDGAASPPPA
Sbjct: 251 VHEFGRRKDGDGAASPPPA 269
>Os05g0560200 Conserved hypothetical protein
Length = 223
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 60 ELHRLVNRVLGHYEHYYRTKSAAASTDVLRMFSPSWTSTTE-NLYLWCGGWRPTAALHLL 118
+L LV R + H E Y +A A D + S W S E W GWRPT +HLL
Sbjct: 35 QLGSLVGRFVAHVECY---TAARAEMDPVWTLSAPWASPVERGAAYWLAGWRPTTLVHLL 91
Query: 119 YSKSGAQLETQLPVFXXXXXXXXXXXXXXSAEQLQAADQLQRITVSKEREIENAAASAQE 178
Y++SG + E QLP S QL D LQR TV++E + A QE
Sbjct: 92 YTESGRRFEAQLPDLLLGVSSGNLGDL--SPSQLAQIDDLQRRTVAEEDGLSREMALVQE 149
Query: 179 SLATVKMVXXXXXXXXXXXXXXXXXRSKADGM----RRVLEMADGLRLETMREVVALLRP 234
V + DG+ R VL AD LRL T++ V +L P
Sbjct: 150 GHGAVAVGGGI----------------DVDGIVGRVRGVLGRADALRLRTVKRAVEILEP 193
Query: 235 SQAVHFLIAAAELHLAVHEFG 255
+QA L+AAA++ + EFG
Sbjct: 194 AQAAELLVAAADMEIGFREFG 214
>Os01g0306400 Conserved hypothetical protein
Length = 245
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 87/237 (36%), Gaps = 25/237 (10%)
Query: 20 SGESFAKFFECWISEQXXXXXXXXXXXXXXXXXXXXXXXXELHRLVNRVLGHYEHYYRTK 79
+GE F+E W+ + L LV+ +GH YY K
Sbjct: 22 AGEEMVAFYEAWVGREERIVADLTDALLPARRRRDV-----LAPLVDAAVGHVSEYYERK 76
Query: 80 SAAASTDVLRMFSPSWTSTTENLYLWCGGWRPTAALHLLYSKSGAQLETQLPVFXXXXXX 139
+ A DV+ P W + E +LW GW+P Q
Sbjct: 77 ARLADRDVVAALDPRWLNPLERTFLWAWGWKPALVFRFADGAVAGGSSHQ---------- 126
Query: 140 XXXXXXXXSAEQLQAADQLQRITVSKEREIENAAASAQESLATVKMVXXXXXXXXXXXXX 199
+Q +A ++++ T ERE++ A QESLA +++
Sbjct: 127 ----------QQRRALERVRAATAEAEREVDREVAVVQESLAGPRVLAALRRQHPRNGEA 176
Query: 200 XXXXRSKADGMRRVLEMADGLRLETMREVVALLRPSQAVHFLIAAAELHLAVHEFGR 256
+ +R +L AD LR T+R+VV L P QA FL A HL VH GR
Sbjct: 177 DEAVAAVGRSLRVLLAAADALRERTVRDVVGTLAPDQAGAFLAAMLRFHLGVHRAGR 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,145,271
Number of extensions: 217360
Number of successful extensions: 570
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 4
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)