Os01g0306400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0306400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 442.35 | 0.988 | 5.03 | 1.91 | 5.36 | -2.43 | 1.21 | 2.6 | -0.105 | 15.6 | 21 | 1098 | 2.41 | -- |
| 450.45 | 0.988 | 5.09 | 1.31 | 5.84 | -2.81 | 1.45 | -- | -0.202 | 15.8 | 21.4 | 1016 | 0.179 | -- |
| 444.83 | 0.982 | 5.03 | 1.93 | 5.55 | -2.52 | -- | 2.83 | -0.122 | 15.6 | 20.96 | 1051 | 1.56 | -- |
| 454.47 | 0.993 | 5.12 | 1.16 | 5.78 | -2.59 | -- | -- | -0.264 | 15.8 | 21.87 | 1003 | 0.0487 | -- |
| 675.65 | 1.21 | 5.32 | 0.439 | -- | -4.89 | -- | 2.66 | -0.948 | -- | -78.32 | 1578 | 3.2 | -- |
| 637.49 | 1.18 | 5.26 | 0.357 | 4.93 | -- | 0.698 | -- | -0.929 | 15.9 | -- | -- | -- | -- |
| 638.91 | 1.18 | 5.26 | 0.367 | 4.93 | -- | -- | -- | -0.925 | 15.9 | -- | -- | -- | -- |
| 638.92 | 1.18 | 5.22 | 0.376 | -- | -4.92 | -- | -- | -0.925 | -- | -77.28 | 1582 | 3.29 | -- |
| 485.73 | 1.03 | 5.14 | -- | 5.64 | -2.27 | -- | -- | -0.409 | 15.8 | 22 | 1004 | 0.296 | -- |
| 1972.01 | 2.08 | 5.25 | 0.164 | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
| 642.45 | 1.19 | 5.27 | -- | 4.92 | -- | -- | -- | -0.966 | 15.9 | -- | -- | -- | -- |
| 642.45 | 1.18 | 5.23 | -- | -- | -4.92 | -- | -- | -0.966 | -- | -75.55 | 1587 | 3.33 | -- |
| 1972.72 | 2.07 | 5.25 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 448.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 7 | 460.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 8 | 460.69 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 15 |
| 12 | 462.07 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 18 | 463.50 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 22 | 464.50 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 23 | 464.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 3 |
| 47 | 467.37 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 69 | 469.03 | temperature | 25.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 86 | 470.08 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 88 | 470.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 112 | 472.01 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 116 | 472.17 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 124 | 472.46 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 148 | 473.35 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 182 | 474.69 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 199 | 475.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 304 | 478.87 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 334 | 479.66 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 338 | 479.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 398 | 480.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 412 | 481.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 414 | 481.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 437 | 481.68 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 440 | 481.75 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 454 | 482.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 9 |
| 459 | 482.19 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 2 |
| 494 | 482.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 495 | 482.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 519 | 483.41 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 522 | 483.51 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 527 | 483.59 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 531 | 483.66 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 534 | 483.70 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 557 | 484.05 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 578 | 484.37 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 615 | 484.92 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 618 | 484.94 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 632 | 485.24 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 661 | 485.61 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 665 | 485.67 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 671 | 485.84 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 709 | 486.31 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 6 |
| 736 | 486.66 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 768 | 486.93 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 809 | 487.33 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 838 | 487.56 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 842 | 487.59 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 902 | 488.21 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 978 | 488.84 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 1000 | 489.02 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 6 |