BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0306400 Os01g0306400|Os01g0306400
(245 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18650.1 | chr4:10264043-10265422 REVERSE LENGTH=233 59 2e-09
AT1G58330.1 | chr1:21641150-21641827 FORWARD LENGTH=226 58 4e-09
AT4G18690.1 | chr4:10282788-10283636 FORWARD LENGTH=283 54 8e-08
>AT4G18650.1 | chr4:10264043-10265422 REVERSE LENGTH=233
Length = 232
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 44/99 (44%)
Query: 18 MEHGAGEEMVAFYEAWVGREERIVADLTDALLPARRRRDVLAPLVDAAVGHVSEYYERKA 77
M + E+ + FYE+WV + E + L A L L+ H YY K
Sbjct: 4 MRNLVEEKFLEFYESWVIQLELYLHQLLIAHNNNTMSETELRHLISKLTTHHKAYYTAKW 63
Query: 78 RLADRDVVAALDPRWLNPLERTFLWAWGWKPALVFRFAD 116
DV+A WLNPLE W GWKP++VFR D
Sbjct: 64 AAIREDVLAFFGSVWLNPLENACSWLTGWKPSMVFRMVD 102
>AT1G58330.1 | chr1:21641150-21641827 FORWARD LENGTH=226
Length = 225
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 21 GAGEEMVAFYEAWVGREERIV------ADLTDALLPARRRRDVLAPLVDAAVGHVSEYYE 74
+ E +F+ W+ R + V AD T + P LV + H +YYE
Sbjct: 5 SSSETFASFFNDWLCRHRQFVQQLAHLADETTIVTPIEEE-----SLVSNFLSHYLQYYE 59
Query: 75 RKA---RLADRDVVAALDPRWLNPLERTFLWAWGWKPALVFRFADGAVAGGSSHQ 126
K+ +A D+ P WL+ E+ LW G+KP +VF+ +V +SHQ
Sbjct: 60 EKSVAMSVAGDDIYDFFSPPWLSSYEKLILWIGGFKPGMVFKLITTSVNDLTSHQ 114
>AT4G18690.1 | chr4:10282788-10283636 FORWARD LENGTH=283
Length = 282
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 28 AFYEAWVGREERIVADLTDALLPARRRRD-VLAPLVDAAVGHVSEYYERKARLADRDVVA 86
+YE W+ + + + DL +AL+ R + D L LV V +Y E+++ L+ R +
Sbjct: 17 CYYE-WMSVQAKHIVDLKEALMSHRSKEDHKLEELVGKIVNDFQKYTEKRSELSRRSCSS 75
Query: 87 ALDPRWLNPLERTFLWAWGWKPALVFR 113
P W +PLE LW G +P+ R
Sbjct: 76 YFAPSWNSPLENGLLWMGGCRPSSFIR 102
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,911,286
Number of extensions: 123420
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)