FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0159000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0256) R2 : 0.00398
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0728 (0.0539) R2dN8 : 0.00514 R2N8 : 0.00398
σ : 0.482
deviance : 106.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.67 0.471 3.11 0.0893 0.39 0.166 -1.91 -1.41 0.0871 10.3 0.5225 48 -- --
102.43 0.475 3.12 -0.00681 0.279 0.0308 -0.472 -- 0.068 8.44 0.5225 48 -- --
102.6 0.472 3.12 -0.0212 0.426 0.239 -- -0.0426 0.0568 10.9 0.2308 192 -- --
102.54 0.472 3.12 0.00276 0.406 0.228 -- -- 0.0794 10.9 0.004861 198 -- --
101.99 0.47 3.12 -0.0901 -- 0.375 -- -0.358 0.0948 -- 4.645 1079 -- --
102.46 0.475 3.12 -0.00959 0.254 -- -0.491 -- 0.067 8.1 -- -- -- --
103.18 0.476 3.12 -0.0232 0.254 -- -- -- 0.0675 8.21 -- -- -- --
102.25 0.471 3.12 0.0184 -- 0.405 -- -- 0.102 -- 2.367 1042 -- --
102.54 0.472 3.12 -- 0.401 0.228 -- -- 0.079 10.9 7.84e-06 199 -- --
106.74 0.483 3.13 -0.0213 -- -- -- -- 0.0704 -- -- -- -- --
103.19 0.475 3.12 -- 0.254 -- -- -- 0.0701 8.22 -- -- -- --
102.24 0.471 3.12 -- -- 0.433 -- -- 0.0932 -- 0.9494 1035 -- --
106.76 0.482 3.13 -- -- -- -- -- 0.0728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.12 temperature 25.0 270 > th dose dependent rect. 2 1
2 93.64 temperature 25.0 270 > th dose independent rect. 2 1
3 94.26 wind 9.0 30 < th dose independent rect. 3 23
4 94.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 94.36 wind 3.0 30 < th dose independent rect. 2 1
7 94.37 atmosphere 1000.0 30 > th dose dependent rect. 2 1
10 94.40 wind 1.0 30 > th dose independent rect. 2 1
15 94.44 temperature 10.0 30 > th dose independent rect. 2 1
17 94.44 temperature 30.0 30 < th dose independent rect. 2 1
18 94.44 humidity 50.0 30 > th dose independent rect. 2 1
22 94.44 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 94.44 radiation 1.0 30 < th dose independent rect. 2 1
29 94.44 precipitation 0.1 30 < th dose independent rect. 2 1
30 94.44 temperature 10.0 30 > th dose independent rect. 3 23
32 94.44 radiation 1.0 30 < th dose dependent rect. 2 1
37 94.44 precipitation 0.1 30 < th dose dependent rect. 2 1
38 94.45 temperature 30.0 30 < th dose dependent rect. 2 1
39 94.48 wind 9.0 30 < th dose dependent rect. 2 1
42 94.50 temperature 10.0 30 > th dose dependent rect. 2 1
46 94.55 humidity 50.0 30 > th dose dependent rect. 2 1
52 94.64 atmosphere 1015.0 30 < th dose dependent rect. 2 1
56 94.72 temperature 25.0 90 > th dose independent rect. 1 3
61 94.83 temperature 25.0 10 > th dose independent rect. 23 1
62 94.84 temperature 25.0 30 > th dose dependent rect. 4 2
110 95.50 temperature 25.0 30 > th dose independent rect. 4 2
121 95.91 temperature 25.0 10 > th dose independent rect. 23 7
125 96.05 radiation 10.0 43200 < th dose dependent rect. 3 1
130 96.11 wind 9.0 1440 < th dose independent rect. 3 1
131 96.11 temperature 10.0 1440 > th dose independent rect. 3 1
134 96.11 temperature 30.0 1440 < th dose independent rect. 3 1
138 96.11 humidity 50.0 1440 > th dose independent rect. 3 1
147 96.11 atmosphere 995.0 1440 > th dose independent rect. 3 1
148 96.11 radiation 1.0 1440 < th dose independent rect. 3 1
168 96.11 temperature 10.0 1440 > th dose independent rect. 4 23
171 96.11 radiation 1.0 1440 < th dose dependent rect. 3 1
187 96.21 precipitation 0.1 270 > th dose independent rect. 21 1
189 96.21 precipitation 0.1 270 > th dose dependent rect. 21 1
194 96.44 atmosphere 1005.0 30 > th dose dependent rect. 1 4
209 96.76 temperature 30.0 30 < th dose independent rect. 3 23
213 96.90 atmosphere 995.0 10 > th dose independent rect. 3 23
216 96.93 atmosphere 1005.0 270 > th dose dependent rect. 1 1
220 96.97 atmosphere 1000.0 10 < th dose independent rect. 5 1
228 96.97 atmosphere 1000.0 10 < th dose dependent rect. 5 1
247 97.06 precipitation 0.1 30 < th dose independent rect. 3 23
248 97.06 precipitation 0.1 30 < th dose dependent rect. 3 23
283 97.61 temperature 25.0 10 > th dose independent rect. 20 10
323 98.38 humidity 90.0 270 < th dose independent rect. 1 1
332 98.46 radiation 40.0 10 < th dose independent rect. 11 18
350 98.58 radiation 40.0 30 < th dose independent rect. 11 16
371 98.80 humidity 50.0 30 > th dose independent rect. 3 23
391 98.93 radiation 10.0 90 < th dose dependent rect. 10 2
400 98.98 humidity 90.0 90 < th dose independent rect. 1 4
402 98.99 radiation 30.0 30 < th dose independent rect. 11 1
417 99.07 wind 3.0 30 < th dose dependent rect. 2 3
428 99.13 temperature 25.0 10 > th dose independent sin 10 NA
433 99.15 atmosphere 1005.0 30 > th dose independent rect. 1 4
442 99.18 radiation 30.0 90 < th dose independent rect. 1 12
463 99.25 temperature 30.0 10 > th dose independent rect. 11 1
466 99.25 humidity 90.0 270 > th dose dependent rect. 20 1
476 99.28 radiation 40.0 10 < th dose dependent rect. 12 1
502 99.36 temperature 30.0 90 > th dose independent rect. 11 1
523 99.41 precipitation 0.1 1440 > th dose dependent rect. 18 1
534 99.45 radiation 40.0 10 < th dose independent rect. 11 11
542 99.49 temperature 30.0 10 > th dose dependent rect. 11 1
554 99.52 radiation 20.0 270 < th dose independent rect. 22 14
557 99.52 radiation 40.0 90 < th dose dependent rect. 1 11
569 99.55 radiation 40.0 90 < th dose dependent rect. 10 19
570 99.56 temperature 25.0 1440 < th dose independent rect. 5 1
574 99.56 wind 1.0 10 < th dose dependent rect. 5 1
581 99.57 radiation 40.0 90 < th dose independent rect. 1 14
623 99.65 radiation 40.0 10 < th dose independent rect. 11 5
627 99.65 radiation 40.0 720 < th dose dependent rect. 24 12
640 99.67 radiation 40.0 270 < th dose dependent rect. 22 14
646 99.68 wind 7.0 30 < th dose independent rect. 5 21
656 99.69 temperature 25.0 10 > th dose dependent rect. 22 9
710 99.76 wind 1.0 1440 < th dose independent rect. 17 1
713 99.76 wind 3.0 90 < th dose independent rect. 1 4
715 99.76 temperature 20.0 10 > th dose dependent rect. 23 2
721 99.77 precipitation 0.1 720 < th dose independent rect. 7 14
731 99.77 precipitation 0.1 720 < th dose dependent rect. 7 14
754 99.81 wind 9.0 30 < th dose independent rect. 5 23
758 99.81 radiation 40.0 270 < th dose dependent rect. 7 22
832 99.85 wind 9.0 30 < th dose dependent rect. 3 23
855 99.87 precipitation 0.1 1440 > th dose independent rect. 12 1
860 99.87 radiation 40.0 720 < th dose independent rect. 9 3
861 99.87 wind 3.0 10 < th dose independent rect. 1 4
880 99.87 temperature 25.0 30 > th dose dependent sin 11 NA
883 99.87 precipitation 0.1 1440 > th dose dependent rect. 12 1
888 99.88 wind 1.0 1440 > th dose independent rect. 17 1
912 99.90 temperature 30.0 30 < th dose independent rect. 5 21
913 99.90 wind 1.0 1440 < th dose dependent rect. 17 1
937 99.92 radiation 20.0 270 < th dose independent rect. 8 21
947 99.93 radiation 20.0 270 < th dose independent rect. 8 19
952 99.93 radiation 40.0 90 < th dose dependent rect. 1 14
972 99.95 temperature 30.0 30 < th dose independent rect. 5 23
995 99.97 temperature 25.0 30 > th dose independent rect. 16 19