Os05g0560200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0560200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 450.63 | 0.997 | 4.89 | 5.7 | 1.86 | -4.22 | -0.0514 | 38.5 | -1.19 | 12.4 | 30.16 | 4014 | -- | -- |
| 533.65 | 1.08 | 5.61 | -0.215 | 1.92 | -0.451 | -0.374 | -- | -1.32 | 12.3 | 18.8 | 47520 | -- | -- |
| 448.84 | 0.987 | 4.89 | 5.75 | 1.87 | -4.35 | -- | 39.5 | -1.26 | 12.4 | 30.2 | 4007 | -- | -- |
| 534.25 | 1.08 | 5.61 | -0.233 | 1.92 | -0.438 | -- | -- | -1.33 | 12.3 | 18.8 | 47520 | -- | -- |
| 663.52 | 1.2 | 4.89 | 6.13 | -- | -4.89 | -- | 41.4 | -1.26 | -- | 30.12 | 3928 | -- | -- |
| 538 | 1.09 | 5.62 | -0.33 | 1.87 | -- | -0.296 | -- | -1.37 | 12.3 | -- | -- | -- | -- |
| 538.38 | 1.09 | 5.62 | -0.342 | 1.87 | -- | -- | -- | -1.37 | 12.3 | -- | -- | -- | -- |
| 745.71 | 1.28 | 5.65 | -0.461 | -- | 0.621 | -- | -- | -1.34 | -- | 30.12 | 3928 | -- | -- |
| 535.58 | 1.08 | 5.6 | -- | 1.86 | -0.409 | -- | -- | -1.25 | 12.3 | 17.01 | 47520 | -- | -- |
| 757.52 | 1.29 | 5.66 | -0.403 | -- | -- | -- | -- | -1.4 | -- | -- | -- | -- | -- |
| 541.46 | 1.09 | 5.62 | -- | 1.87 | -- | -- | -- | -1.33 | 12.3 | -- | -- | -- | -- |
| 732.61 | 1.26 | 5.64 | -- | -- | 1.73 | -- | -- | -1.31 | -- | 35.62 | 4016 | -- | -- |
| 761.81 | 1.29 | 5.65 | -- | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 458.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 459.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 6 | 461.53 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 8 | 461.81 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 9 | 461.89 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 12 | 462.78 | temperature | 30 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 27 | 462.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 31 | 463.00 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 37 | 463.25 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 38 | 463.35 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 40 | 463.39 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 16 |
| 56 | 463.54 | temperature | 30 | 4320 | > th | dose dependent | sin | 2 | NA |
| 60 | 463.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 96 | 463.70 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 188 | 463.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 206 | 463.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 214 | 464.03 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 263 | 464.86 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 323 | 465.33 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 361 | 465.53 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 364 | 465.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 368 | 465.72 | temperature | 30 | 4320 | > th | dose dependent | sin | 11 | NA |
| 384 | 465.83 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 9 | NA |
| 388 | 465.92 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 432 | 466.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 10 |
| 437 | 466.33 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 438 | 466.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 451 | 466.46 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 454 | 466.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 464 | 466.64 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 642 | 467.40 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 647 | 467.47 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 4 |
| 675 | 467.63 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 725 | 468.11 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 19 |
| 735 | 468.28 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 826 | 468.84 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 844 | 469.03 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 886 | 469.57 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 890 | 469.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 902 | 469.88 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 906 | 469.93 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 907 | 469.93 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 909 | 469.95 | atmosphere | 1005 | 720 | < th | dose dependent | sin | 14 | NA |
| 911 | 469.96 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 928 | 470.00 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 929 | 470.02 | atmosphere | 1000 | 270 | < th | dose independent | sin | 12 | NA |
| 936 | 470.10 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 17 | 21 |
| 987 | 470.41 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 19 | 20 |
| 992 | 470.44 | humidity | 80 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 995 | 470.46 | humidity | 80 | 270 | > th | dose dependent | rect. | 11 | 23 |