BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0129500 Os01g0129500|AK066377
(633 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0129500 Protein of unknown function DUF1666 family pro... 974 0.0
Os08g0519600 Protein of unknown function DUF1666 family pro... 154 2e-37
Os09g0413600 Protein of unknown function DUF1666 family pro... 87 4e-17
>Os01g0129500 Protein of unknown function DUF1666 family protein
Length = 633
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/633 (77%), Positives = 491/633 (77%)
Query: 1 MRNASGSSCCSRVAAPLHAQVLGSPSPSHGYGGAGDGCLLQAPPPAVVCGEMXXXXXXXX 60
MRNASGSSCCSRVAAPLHAQVLGSPSPSHGYGGAGDGCLLQAPPPAVVCGEM
Sbjct: 1 MRNASGSSCCSRVAAPLHAQVLGSPSPSHGYGGAGDGCLLQAPPPAVVCGEMLALTTPAP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRRGHGSCDEHQVTETSGREEFAGADDIA 120
HRRGHGSCDEHQVTETSGREEFAGADDIA
Sbjct: 61 PSLLHALASLNVLLLVAYLLLFLLAKLAAGLHRRGHGSCDEHQVTETSGREEFAGADDIA 120
Query: 121 GVQQQQAEMLFWFDEAVFEDTALLGGEGKDQLMYDXXXXXXXXXXXRCLQVESTFPMVES 180
GVQQQQAEMLFWFDEAVFEDTALLGGEGKDQLMYD RCLQVESTFPMVES
Sbjct: 121 GVQQQQAEMLFWFDEAVFEDTALLGGEGKDQLMYDAATTPPTPTPARCLQVESTFPMVES 180
Query: 181 TRRISPHHRQCSFSHEEPKXXXXXXXXXXSSQKDIIPAAVPSPENVPVEAXXXXXXXXXX 240
TRRISPHHRQCSFSHEEPK SSQKDIIPAAVPSPENVPVEA
Sbjct: 181 TRRISPHHRQCSFSHEEPKAAAAAAAATASSQKDIIPAAVPSPENVPVEAGEEDGHGEHG 240
Query: 241 XXXXXXXKRFRGDDVKLFVNSRALADTKKLLLEGAMAGKGGVQREREEESRLGAXXXXXX 300
KRFRGDDVKLFVNSRALADTKKLLLEGAMAGKGGVQREREEESRLGA
Sbjct: 241 EEDDEEEKRFRGDDVKLFVNSRALADTKKLLLEGAMAGKGGVQREREEESRLGASTLTSE 300
Query: 301 XXXXXXXXXXXXXVTKDSETEYPFXXXXXXXXXXWESYALFRKYDEDMVYFHRVGAQKLT 360
VTKDSETEYPF WESYALFRKYDEDMVYFHRVGAQKLT
Sbjct: 301 STSKSSVEWRSSTVTKDSETEYPFSSSSRRSSSRWESYALFRKYDEDMVYFHRVGAQKLT 360
Query: 361 ETESYRSIKYQPRSVSERIVQKLTPKPRPAIGLRDPYPELERVYVAQICLTWEALNWNYA 420
ETESYRSIKYQPRSVSERIVQKLTPKPRPAIGLRDPYPELERVYVAQICLTWEALNWNYA
Sbjct: 361 ETESYRSIKYQPRSVSERIVQKLTPKPRPAIGLRDPYPELERVYVAQICLTWEALNWNYA 420
Query: 421 SFRRHAGDIAARCCPARVAQEFQQFQVLLHRFIENEPYEYGLRPEVYARMKNSSPKLLLV 480
SFRRHAGDIAARCCPARVAQEFQQFQVLLHRFIENEPYEYGLRPEVYARMKNSSPKLLLV
Sbjct: 421 SFRRHAGDIAARCCPARVAQEFQQFQVLLHRFIENEPYEYGLRPEVYARMKNSSPKLLLV 480
Query: 481 PEFRDEEDEKDDLISAVQFLYILEESIRTFMAFLRADKRSHYQMFREMVKRRTSSMDQTX 540
PEFRDEEDEKDDLISAVQFLYILEESIRTFMAFLRADKRSHYQMFREMVKRRTSSMDQT
Sbjct: 481 PEFRDEEDEKDDLISAVQFLYILEESIRTFMAFLRADKRSHYQMFREMVKRRTSSMDQTL 540
Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSILLGLIDLKIVARVLRMPEITDQ 600
MSILLGLIDLKIVARVLRMPEITDQ
Sbjct: 541 VITLKKANKKKKSRLKDLTRPRRCLRRTKLREEEEMSILLGLIDLKIVARVLRMPEITDQ 600
Query: 601 QLHWCEEKMNRVKVDPAQGKMQRDPSPLFFPAH 633
QLHWCEEKMNRVKVDPAQGKMQRDPSPLFFPAH
Sbjct: 601 QLHWCEEKMNRVKVDPAQGKMQRDPSPLFFPAH 633
>Os08g0519600 Protein of unknown function DUF1666 family protein
Length = 447
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 159/323 (49%), Gaps = 47/323 (14%)
Query: 339 ALFRKYDEDMVYFHRVGAQKLTETESYRSIKYQPRSVSE--RIVQKLTPKPRPAI----- 391
+L+ KY E M F ++ Q L + S+ K PRS S+ ++ L+ K R +
Sbjct: 141 SLYEKYCERMAVFDKMITQLLKDPGSFNISKKSPRSASKLASTLRNLSFKRRDDLQEDCE 200
Query: 392 ------GLRDPYPELERVYVAQICLTWEALNWNYASFRRHAGDIAAR-----CCPARVAQ 440
DPY LE YV + L+WEAL+ Y H I A + AQ
Sbjct: 201 HLQQQQSEDDPYQTLETAYVGHVSLSWEALHCMYV----HLSLILAAQPDNPTTYSCAAQ 256
Query: 441 EFQQFQVLLHRFIENEPYEYGLRPEVYARMKNSSPKLLLVPEFR------DEEDEKDDLI 494
FQQFQVLL RF+ENEP+E G R E+YAR ++S KLL VP F+ + ED+ + I
Sbjct: 257 AFQQFQVLLQRFVENEPFEQGSRVEIYARSRSSLSKLLQVPTFQVADGKYNAEDQVEPSI 316
Query: 495 SAVQFLYILEESIRTFMAFLRADKRSHYQMFR------EMVKRRTSSMDQTXXXXXXXXX 548
A + +LEESI TF FL+ DK+ + + +++ SS+D+
Sbjct: 317 FASDLIKLLEESIMTFRLFLKKDKKKNSALMSVHSHTGSSIQQVQSSLDK---------- 366
Query: 549 XXXXXXXXXXXXXXXXXXXXXXXXXXXMSILLGLIDLKIVARVLRMPEITDQQLHWCEEK 608
+ +L LID+K+V+RVLRM +++ +QL WCEEK
Sbjct: 367 -KEVKVKELFKKKKGWKSKTWPATMEEVQLLFALIDIKVVSRVLRMAKLSKEQLLWCEEK 425
Query: 609 MNRVKVDPAQGKMQRDPSPLFFP 631
M+ K+D + K++RD SP+ FP
Sbjct: 426 MS--KLDLSDNKLRRDGSPILFP 446
>Os09g0413600 Protein of unknown function DUF1666 family protein
Length = 1136
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 28/253 (11%)
Query: 399 ELERVYVAQICLTWEALNWNYASFRRHAGDIAARCCP------ARVAQEFQQFQVLLHRF 452
+LE VYV Q+CL+WE L W Y A D+ P +VA EFQQFQV++ RF
Sbjct: 891 DLETVYVGQMCLSWEFLRWQY----EQAHDL-PESDPYHSHQYNQVAGEFQQFQVVVQRF 945
Query: 453 IENEPYEYGLRPEVYARMKNSSPKLLLVPEFRDE------EDEK--DDLISAVQFLYILE 504
+E+E ++ G R Y + LL VP +++ ED++ + +I++ + I+E
Sbjct: 946 VEDESFK-GPRLPNYINNRCVLRNLLQVPVIKEDSLKDRMEDQRKGNYVITSEELEEIME 1004
Query: 505 ESIRTFMAFLRADKRSHYQMFREMVKRRTSSMD------QTXXXXXXXXXXXXXXXXXXX 558
E +R F F+R+D+ + + + D
Sbjct: 1005 ECMRVFWEFIRSDRVETTSVLKGLSSTHVELQDPLDHDLMMHIDSTLQKKEKRLKDLLRT 1064
Query: 559 XXXXXXXXXXXXXXXXXMSILLGLIDLKIVARVLRMPEITDQQLHWCEEKMNRVKVDPAQ 618
S+ +D+++VARVLRMP IT +QL WC+ K++++ +
Sbjct: 1065 GNCIVKKFKKPKEDTLNQSLFFSQVDMRLVARVLRMPRITSEQLQWCKAKLDKIAL--VD 1122
Query: 619 GKMQRDPSPLFFP 631
++ R+ S L FP
Sbjct: 1123 RRIHREASFLLFP 1135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,761,769
Number of extensions: 683042
Number of successful extensions: 1877
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1869
Number of HSP's successfully gapped: 4
Length of query: 633
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 526
Effective length of database: 11,448,903
Effective search space: 6022122978
Effective search space used: 6022122978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)