BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0127900 Os01g0127900|AK070177
(428 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0127900 Mannose-6-phosphate isomerase, type I family p... 852 0.0
Os09g0389000 Mannose-6-phosphate isomerase, type I family p... 528 e-150
Os11g0600900 Similar to Mannose-6-phosphate isomerase (ManA) 370 e-103
Os02g0674466 79 5e-15
>Os01g0127900 Mannose-6-phosphate isomerase, type I family protein
Length = 428
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/428 (97%), Positives = 416/428 (97%)
Query: 1 MAGPTXXXXXXXXXXXXLRLRCAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAEL 60
MAGPT LRLRCAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAEL
Sbjct: 1 MAGPTPPPPEEEPSSPSLRLRCAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAEL 60
Query: 61 WMGTHPSAPSSLLADGLLRDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHP 120
WMGTHPSAPSSLLADGLLRDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHP
Sbjct: 61 WMGTHPSAPSSLLADGLLRDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHP 120
Query: 121 DKDLAEVLHALRPATYKDGNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGP 180
DKDLAEVLHALRPATYKDGNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGP
Sbjct: 121 DKDLAEVLHALRPATYKDGNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGP 180
Query: 181 EDAAKLLSVKEYHGVNEVKSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEK 240
EDAAKLLSVKEYHGVNEVKSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEK
Sbjct: 181 EDAAKLLSVKEYHGVNEVKSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEK 240
Query: 241 ENLVLSLEKQYPEDVGVLSAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVV 300
ENLVLSLEKQYPEDVGVLSAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVV
Sbjct: 241 ENLVLSLEKQYPEDVGVLSAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVV 300
Query: 301 RAGLTPKYRDVQTLCSMLTYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELV 360
RAGLTPKYRDVQTLCSMLTYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELV
Sbjct: 301 RAGLTPKYRDVQTLCSMLTYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELV 360
Query: 361 VISPVSGPSVYLVMAGEGEIQVDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRA 420
VISPVSGPSVYLVMAGEGEIQVDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRA
Sbjct: 361 VISPVSGPSVYLVMAGEGEIQVDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRA 420
Query: 421 GVNSRFFN 428
GVNSRFFN
Sbjct: 421 GVNSRFFN 428
>Os09g0389000 Mannose-6-phosphate isomerase, type I family protein
Length = 399
Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/411 (66%), Positives = 310/411 (75%), Gaps = 25/411 (6%)
Query: 19 RLRCAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAELWMGTHPSAPSSLLADGLL 78
RLRCAVQHYEWGRRG AS+VARL AD PD AR A
Sbjct: 13 RLRCAVQHYEWGRRGAASIVARL----ADQQDPDLARADTRRARPRRRRAVGRRPP---- 64
Query: 79 RDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHPDKDLAEVLHALRPATYKD 138
+ + G +VLSVAKALSIQAHPDK AE LHALRP+ YKD
Sbjct: 65 --------------IPLQAGAGNAGYVQVLSVAKALSIQAHPDKKRAEALHALRPSVYKD 110
Query: 139 GNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGPEDAAKLLSVKEYHGVNEV 198
NHKPEMAIA+TEFR L GFA IQELKDVLRTVPEVE L+G E AAKL+S KEY N+V
Sbjct: 111 DNHKPEMAIAITEFRALYGFAAIQELKDVLRTVPEVEGLIGHEHAAKLMSFKEYDAGNQV 170
Query: 199 KSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEKENLVLSLEKQYPEDVGVL 258
KS L+SAF LM ASK+ VSEA++KLI RLN ESK+RTLT+KE LVLSLE+QY EDVGVL
Sbjct: 171 KSTLQSAFANLMLASKDMVSEALSKLISRLNIESKIRTLTDKEELVLSLERQYQEDVGVL 230
Query: 259 SAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVVRAGLTPKYRDVQTLCSML 318
+A FFNY+KLSPGEAL+IGANEPHAYLSGECIECMATSDNVVRAGLTPKY+D+QTLCSML
Sbjct: 231 AALFFNYVKLSPGEALHIGANEPHAYLSGECIECMATSDNVVRAGLTPKYKDIQTLCSML 290
Query: 319 TYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELVVISPVSGPSVYLVMAGEG 378
TYKQ FPEIL+GVPVQP+VRRY+PPFDEFEVD C +P E+V IS V GPSV+LV+ GEG
Sbjct: 291 TYKQAFPEILQGVPVQPHVRRYSPPFDEFEVDWCLVPADEVVTISSVPGPSVFLVITGEG 350
Query: 379 EIQVDSMPNGEK-SKQGDVFFVPAYTEVKFSASGPECMQLYRAGVNSRFFN 428
E+ +S+ G+K +K+GDVFFVPAYTE+ S + MQLYRAGVNSRFF+
Sbjct: 351 ELHAESLSGGKKEAKEGDVFFVPAYTEINLSTH--KSMQLYRAGVNSRFFS 399
>Os11g0600900 Similar to Mannose-6-phosphate isomerase (ManA)
Length = 227
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 200/227 (88%)
Query: 202 LRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEKENLVLSLEKQYPEDVGVLSAF 261
L+SAFT LMTASKE VSEA++KL RLN ESKVRTLT+KE LVLSLE QYPEDVGVL+AF
Sbjct: 1 LQSAFTNLMTASKETVSEAVSKLKSRLNIESKVRTLTKKEQLVLSLEMQYPEDVGVLAAF 60
Query: 262 FFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVVRAGLTPKYRDVQTLCSMLTYK 321
FFNY+KL+PGEALYIGANEPHAYLSGEC+ECMATSDNVVRAGLTPKYRDVQTLCSMLTYK
Sbjct: 61 FFNYVKLNPGEALYIGANEPHAYLSGECVECMATSDNVVRAGLTPKYRDVQTLCSMLTYK 120
Query: 322 QVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELVVISPVSGPSVYLVMAGEGEIQ 381
Q +PEILRGVPVQ YV RY PP +EFEVD C LP GE V +SPV GPS++LVM GEG+I+
Sbjct: 121 QNYPEILRGVPVQAYVTRYIPPSEEFEVDRCLLPSGESVTMSPVPGPSIFLVMTGEGKIE 180
Query: 382 VDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRAGVNSRFFN 428
DSM + K+K+GDVFFVPA+TEV+ ASGP MQLYRAGVNSRFF+
Sbjct: 181 ADSMLDEGKAKEGDVFFVPAHTEVRILASGPGSMQLYRAGVNSRFFS 227
>Os02g0674466
Length = 121
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 47/61 (77%), Gaps = 7/61 (11%)
Query: 46 ADDHGPDPARPYAELWMGTHPSAPSSLL--ADGLLRDWLARHPAALGPAVAARWGGDLPF 103
AD + P+ ARPY ELWMGT SAPSSLL A+GLLRDWLAR+ PAV+A WGGDLPF
Sbjct: 4 ADANDPNLARPYTELWMGTQLSAPSSLLAAANGLLRDWLARN-----PAVSACWGGDLPF 58
Query: 104 L 104
L
Sbjct: 59 L 59
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,967,777
Number of extensions: 663279
Number of successful extensions: 1514
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1509
Number of HSP's successfully gapped: 4
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)