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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0389000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mannose-6-phosphate isomerase, type I family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0437) R2 : 0.47
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.923 (0.139) R2dC : 0.0766 R2C : 0.223
β3 : 1.74 (0.152) R2dE : 0.239 R2E : 0.393
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0774 (0.0958) R2dN8 : 0.00105 R2N8 : 0.0067
σ : 0.817
deviance : 307.37
__
_____
C
peak time of C : 5.83
E
wheather : temperature
threshold : 24.7
memory length : 267
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.31
open length of G : 1.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.87 0.816 3.77 -0.548 0.878 1.79 0.811 -0.0818 -0.193 5.99 24.64 272 0.95 1.94
300.86 0.808 3.77 -0.55 0.925 1.82 0.888 -- -0.123 5.94 24.69 270 1.05 1.58
299.49 0.806 3.75 -0.54 0.936 1.75 -- 0.367 -0.156 5.77 24.7 267 1.32 1.23
299.66 0.806 3.75 -0.541 0.928 1.75 -- -- -0.135 5.8 24.7 267 1.31 1.25
326.76 0.842 3.76 -0.522 -- 2.16 -- 0.159 -0.106 -- 24.92 274 1.3 1.33
380.48 0.914 3.81 -0.513 1.85 -- 1.06 -- -0.455 5.25 -- -- -- --
383.22 0.917 3.81 -0.513 1.86 -- -- -- -0.461 5.18 -- -- -- --
326.71 0.842 3.76 -0.537 -- 2.21 -- -- -0.112 -- 25 274 1.28 1.4
307.37 0.817 3.74 -- 0.923 1.74 -- -- -0.0774 5.83 24.7 267 1.31 1.25
563.98 1.11 3.83 -0.447 -- -- -- -- -0.414 -- -- -- -- --
390.16 0.924 3.8 -- 1.85 -- -- -- -0.404 5.19 -- -- -- --
334.55 0.852 3.76 -- -- 2.2 -- -- -0.0827 -- 24.95 273 1.28 1.46
569.26 1.11 3.82 -- -- -- -- -- -0.364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.86 temperature 25.0 270 < th dose independent rect. 1 2
2 309.16 temperature 25.0 90 < th dose independent rect. 1 5
3 310.71 temperature 25.0 270 < th dose independent rect. 23 6
8 314.74 temperature 30.0 270 < th dose dependent rect. 23 6
12 316.20 temperature 10.0 30 > th dose dependent rect. 6 21
15 317.36 temperature 30.0 270 < th dose dependent rect. 1 2
18 318.16 wind 5.0 10 < th dose dependent rect. 3 3
30 320.03 temperature 10.0 90 > th dose dependent rect. 6 19
33 320.33 temperature 10.0 270 > th dose dependent rect. 19 14
44 321.96 atmosphere 1015.0 90 < th dose independent rect. 6 19
46 322.45 atmosphere 1015.0 270 < th dose dependent rect. 1 3
51 322.94 wind 3.0 30 < th dose independent rect. 3 3
58 323.48 wind 5.0 90 < th dose independent rect. 1 5
64 323.77 precipitation 0.1 10 < th dose independent rect. 3 3
65 323.77 precipitation 0.1 10 < th dose dependent rect. 3 3
67 323.85 atmosphere 1015.0 10 < th dose independent rect. 6 21
75 324.43 wind 5.0 270 < th dose independent rect. 1 3
76 324.47 atmosphere 1015.0 90 < th dose dependent rect. 1 5
77 324.52 precipitation 0.1 90 < th dose independent rect. 1 5
78 324.52 precipitation 0.1 90 < th dose dependent rect. 1 5
80 324.64 wind 9.0 90 < th dose dependent rect. 1 5
87 324.95 precipitation 0.1 270 < th dose independent rect. 1 3
88 324.95 precipitation 0.1 270 < th dose dependent rect. 1 3
93 325.29 wind 1.0 270 > th dose independent rect. 1 2
98 325.53 atmosphere 1015.0 270 < th dose independent rect. 4 21
100 325.64 humidity 50.0 10 > th dose dependent rect. 3 3
104 325.88 wind 9.0 10 < th dose independent rect. 6 21
105 325.88 humidity 90.0 90 > th dose dependent rect. 3 3
106 325.89 wind 9.0 90 < th dose independent rect. 6 19
107 325.95 wind 9.0 10 < th dose dependent rect. 1 5
117 326.19 temperature 20.0 270 > th dose independent rect. 5 19
128 326.50 temperature 10.0 10 > th dose independent rect. 3 3
131 326.50 humidity 50.0 10 > th dose independent rect. 3 3
134 326.50 atmosphere 995.0 10 > th dose independent rect. 3 3
135 326.50 atmosphere 1010.0 10 < th dose independent rect. 3 3
137 326.50 radiation 20.0 10 < th dose independent rect. 3 3
140 326.50 temperature 10.0 10 > th dose independent rect. 6 21
144 326.54 temperature 10.0 90 > th dose independent rect. 1 5
147 326.54 humidity 50.0 90 > th dose independent rect. 1 5
150 326.54 atmosphere 995.0 90 > th dose independent rect. 1 5
151 326.54 atmosphere 1010.0 90 < th dose independent rect. 1 5
153 326.54 radiation 20.0 90 < th dose independent rect. 1 5
157 326.54 temperature 10.0 90 > th dose independent rect. 6 19
177 326.71 humidity 90.0 90 > th dose independent rect. 3 3
180 326.78 atmosphere 1015.0 30 < th dose dependent rect. 3 3
192 327.11 humidity 50.0 90 > th dose dependent rect. 1 5
198 327.23 radiation 40.0 90 < th dose dependent rect. 1 5
201 327.30 precipitation 0.1 10 < th dose independent rect. 6 21
202 327.30 precipitation 0.1 10 < th dose dependent rect. 6 21
210 327.49 temperature 10.0 270 > th dose independent rect. 1 3
213 327.49 humidity 50.0 270 > th dose independent rect. 1 3
216 327.49 atmosphere 995.0 270 > th dose independent rect. 1 3
217 327.49 atmosphere 1010.0 270 < th dose independent rect. 1 3
219 327.49 radiation 1.0 270 < th dose independent rect. 1 3
224 327.49 temperature 10.0 270 > th dose independent rect. 4 21
226 327.49 radiation 1.0 270 < th dose dependent rect. 1 3
238 327.62 precipitation 0.1 90 < th dose independent rect. 6 19
239 327.62 precipitation 0.1 90 < th dose dependent rect. 6 19
243 327.75 wind 9.0 270 < th dose independent rect. 4 21
264 328.23 radiation 40.0 30 < th dose dependent rect. 3 3
269 328.30 wind 9.0 1440 < th dose independent rect. 2 5
270 328.30 temperature 10.0 1440 > th dose independent rect. 2 5
273 328.30 temperature 30.0 1440 < th dose independent rect. 2 5
277 328.30 humidity 50.0 1440 > th dose independent rect. 2 5
282 328.30 atmosphere 995.0 1440 > th dose independent rect. 2 5
283 328.30 radiation 40.0 1440 < th dose independent rect. 2 5
287 328.30 temperature 10.0 1440 > th dose independent rect. 7 19
317 328.60 temperature 30.0 10 < th dose dependent rect. 3 3
344 328.82 humidity 50.0 270 > th dose dependent rect. 1 3
378 329.25 wind 1.0 270 > th dose independent rect. 4 20
391 329.50 atmosphere 995.0 10 > th dose independent rect. 6 21
400 329.60 precipitation 0.1 270 < th dose independent rect. 4 21
401 329.60 precipitation 0.1 270 < th dose dependent rect. 4 21
411 329.88 temperature 10.0 270 > th dose dependent rect. 18 6
414 329.93 atmosphere 995.0 90 > th dose independent rect. 6 19
442 330.43 temperature 20.0 270 > th dose independent rect. 18 6
526 331.17 wind 7.0 30 < th dose independent rect. 6 8
546 331.36 wind 9.0 10 < th dose dependent rect. 6 21
587 331.63 radiation 40.0 30 < th dose dependent rect. 14 16
620 331.89 wind 9.0 90 < th dose dependent rect. 6 19
641 332.02 precipitation 0.1 270 < th dose independent rect. 24 17
642 332.02 precipitation 0.1 270 < th dose dependent rect. 24 17
685 332.49 wind 9.0 30 < th dose independent rect. 14 16
708 332.56 radiation 40.0 30 < th dose independent rect. 14 16
709 332.56 precipitation 0.1 10 < th dose independent rect. 14 16
711 332.56 precipitation 0.1 10 < th dose dependent rect. 14 16
714 332.62 wind 9.0 10 < th dose independent rect. 6 10
726 332.71 temperature 10.0 30 > th dose dependent rect. 3 3
758 333.03 temperature 10.0 10 > th dose independent rect. 6 8
760 333.03 atmosphere 995.0 10 > th dose independent rect. 6 8
761 333.03 atmosphere 1015.0 10 < th dose independent rect. 6 8
762 333.03 temperature 10.0 10 > th dose independent rect. 14 16
769 333.12 wind 9.0 90 < th dose dependent rect. 6 9
778 333.17 temperature 25.0 90 < th dose independent sin 8 NA
786 333.34 temperature 10.0 1440 > th dose independent rect. 7 8
789 333.34 temperature 10.0 1440 > th dose independent rect. 15 16
798 333.40 precipitation 0.1 10 < th dose independent rect. 6 8
800 333.40 precipitation 0.1 10 < th dose dependent rect. 6 8
834 333.62 temperature 10.0 30 > th dose dependent rect. 6 8
837 333.63 radiation 1.0 270 < th dose dependent rect. 23 12
842 333.66 humidity 50.0 10 > th dose independent rect. 16 14
846 333.68 wind 9.0 10 < th dose independent rect. 16 14
847 333.68 humidity 50.0 30 > th dose independent rect. 14 16
853 333.75 precipitation 0.1 10 < th dose independent rect. 16 14
855 333.75 precipitation 0.1 10 < th dose dependent rect. 16 14
887 334.06 radiation 30.0 10 < th dose independent rect. 16 14
892 334.11 temperature 10.0 10 > th dose independent rect. 6 10
894 334.11 atmosphere 1015.0 10 < th dose independent rect. 6 10
895 334.11 temperature 10.0 10 > th dose independent rect. 16 14
898 334.15 atmosphere 1015.0 270 < th dose independent rect. 17 7
905 334.18 wind 9.0 30 < th dose dependent rect. 16 14
910 334.27 humidity 50.0 270 > th dose independent rect. 24 17
912 334.30 humidity 90.0 90 > th dose dependent rect. 3 9
929 334.44 temperature 15.0 270 > th dose independent rect. 4 10
934 334.46 humidity 90.0 90 > th dose dependent rect. 3 16
945 334.51 precipitation 0.1 10 < th dose independent rect. 6 10
949 334.51 precipitation 0.1 10 < th dose dependent rect. 6 10
957 334.57 precipitation 0.1 270 < th dose independent rect. 17 7
958 334.57 precipitation 0.1 270 < th dose dependent rect. 17 7
971 334.72 atmosphere 995.0 10 > th dose independent rect. 6 10
978 334.76 atmosphere 1015.0 1440 < th dose independent rect. 3 4
980 334.77 wind 9.0 270 < th dose independent rect. 4 10
981 334.78 atmosphere 995.0 270 > th dose independent rect. 4 21
986 334.81 temperature 20.0 270 > th dose independent rect. 19 15