BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0110100 Os01g0110100|J090073D03
         (75 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0110100  Conserved hypothetical protein                      159   5e-40
Os06g0493600  Similar to PHO1-like protein                         98   1e-21
Os02g0809800  SPX, N-terminal domain containing protein            72   7e-14

>Os01g0110100 Conserved hypothetical protein
          Length = 75

 Score =  159 bits (401), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MQVPMLRSLEYVACYYISGSYRTQEYGYCINTKHIRDLAYAVSFLPYYWRAMQVKPLMSF 60
          MQVPMLRSLEYVACYYISGSYRTQEYGYCINTKHIRDLAYAVSFLPYYWRAMQVKPLMSF
Sbjct: 1  MQVPMLRSLEYVACYYISGSYRTQEYGYCINTKHIRDLAYAVSFLPYYWRAMQVKPLMSF 60

Query: 61 TILNFQPCSFNKKRK 75
          TILNFQPCSFNKKRK
Sbjct: 61 TILNFQPCSFNKKRK 75



>Os06g0493600 Similar to PHO1-like protein
          Length = 828

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 47/52 (90%)

Query: 2   QVPMLRSLEYVACYYISGSYRTQEYGYCINTKHIRDLAYAVSFLPYYWRAMQ 53
           QVP+LRSLEY+ACYYI+ SY+TQ+YGYC   KH RDLAYAVSFLPYYWRAMQ
Sbjct: 610 QVPLLRSLEYLACYYITSSYKTQDYGYCTRVKHFRDLAYAVSFLPYYWRAMQ 661



>Os02g0809800 SPX, N-terminal domain containing protein
          Length = 815

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 40/52 (76%)

Query: 2   QVPMLRSLEYVACYYISGSYRTQEYGYCINTKHIRDLAYAVSFLPYYWRAMQ 53
           Q+P+LR +E+ ACY+++GS+RT  Y  C + +  + LAY +SFLPY+WRA+Q
Sbjct: 596 QIPLLRHMEFTACYFMAGSFRTHPYETCTSGQQYKHLAYVISFLPYFWRALQ 647



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,291,193
Number of extensions: 67799
Number of successful extensions: 113
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 75
Length of database: 17,035,801
Length adjustment: 46
Effective length of query: 29
Effective length of database: 14,633,957
Effective search space: 424384753
Effective search space used: 424384753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)