BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0107000 Os01g0107000|AK066969
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0107000 Peroxisomal membrane anchor protein (Pex14p) d... 820 0.0
Os05g0101200 Peroxisomal membrane anchor protein (Pex14p) d... 302 3e-82
Os05g0578000 Similar to PEX14 protein 70 2e-12
>Os01g0107000 Peroxisomal membrane anchor protein (Pex14p) domain containing
protein
Length = 451
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/429 (93%), Positives = 403/429 (93%)
Query: 1 MAAQSSTPSPQDGSGRGEFSDNLVLQTPQPMREDYIQNAVNFLGHPKVKGSPVFYRRSFL 60
MAAQSSTPSPQDGSGRGEFSDNLVLQTPQPMREDYIQNAVNFLGHPKVKGSPVFYRRSFL
Sbjct: 1 MAAQSSTPSPQDGSGRGEFSDNLVLQTPQPMREDYIQNAVNFLGHPKVKGSPVFYRRSFL 60
Query: 61 EKKGLTKEEIDEAFRRVPDPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGP 120
EKKGLTKEEIDEAFRRVPDPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGP
Sbjct: 61 EKKGLTKEEIDEAFRRVPDPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGP 120
Query: 121 IVPHAQPQLSWSRTLIGVGVFLGVGASAAVILKKLFVPRLKSWIQGAHVEGDEISGNELK 180
IVPHAQPQLSWSRTLIGVGVFLGVGASAAVILKKLFVPRLKSWIQGAHVEGDEISGNELK
Sbjct: 121 IVPHAQPQLSWSRTLIGVGVFLGVGASAAVILKKLFVPRLKSWIQGAHVEGDEISGNELK 180
Query: 181 SKFYEEIKAAIQDSASAFSDIAKTNQELLASKDEDKKILTKLAQAFDSQAEAFRSLSDSL 240
SKFYEEIKAAIQDSASAFSDIAKTNQELLASKDEDKKILTKLAQAFDSQAEAFRSLSDSL
Sbjct: 181 SKFYEEIKAAIQDSASAFSDIAKTNQELLASKDEDKKILTKLAQAFDSQAEAFRSLSDSL 240
Query: 241 NRMSENRFYQYNLMEDHFQSAPWNGPTTNSWRASQQTNAYNTSPRSDFDSGRHPFMPVPG 300
NRMSENRFYQYNLMEDHFQSAPWNGPTTNSWRASQQTNAYNTSPRSDFDSGRHPFMPVPG
Sbjct: 241 NRMSENRFYQYNLMEDHFQSAPWNGPTTNSWRASQQTNAYNTSPRSDFDSGRHPFMPVPG 300
Query: 301 EPSPGAFPARSYVEQQRMQRPGYGFQPQMSNDRWNPGSPLTNYHGAPPYQQYHHGSTNAI 360
EPSPGAFPARSYVEQQRMQRPGYGFQPQMSNDRWNPGSPLTNYHGAPPYQQYHHGSTNAI
Sbjct: 301 EPSPGAFPARSYVEQQRMQRPGYGFQPQMSNDRWNPGSPLTNYHGAPPYQQYHHGSTNAI 360
Query: 361 DEXXXXXXXXXXXXXXESPFQRRWVPPQPPGVVMPEAVAAIRQPRQQVXXXXXXXXXXXX 420
DE ESPFQRRWVPPQPPGVVMPEAVAAIRQPRQQV
Sbjct: 361 DEAPAPAPVPAPAPPAESPFQRRWVPPQPPGVVMPEAVAAIRQPRQQVAAASRPSESAAA 420
Query: 421 TEQPQSGDV 429
TEQPQSGDV
Sbjct: 421 TEQPQSGDV 429
>Os05g0101200 Peroxisomal membrane anchor protein (Pex14p) domain containing
protein
Length = 501
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 212/417 (50%), Positives = 245/417 (58%), Gaps = 50/417 (11%)
Query: 31 MREDYIQNAVNFLGHPKVKGSPVFYRRSFLEKKGLTKEEIDEAFRRVPDPQPNSTDVAAV 90
+REDY+QNAV FL HPKV+GSPV YRRSFLEKKGLTK+EIDEAFRRVPDPQP++T AA
Sbjct: 41 VREDYVQNAVKFLSHPKVRGSPVLYRRSFLEKKGLTKDEIDEAFRRVPDPQPSATATAAA 100
Query: 91 ASQQAGIANQ----SAGVQPYETVQAPQAINTGPIVPHAQPQLSWSRTLIGVGVFLGVGA 146
+ + N S VQPY Q A G I+ QP+ SW R + G+ LG G
Sbjct: 101 SPSPSQHPNNQNHSSTVVQPYAPRQP--ATPAGSIIVATQPKFSWYRAFVAAGLLLGFGV 158
Query: 147 SAAVILKKLFVPRLKSWIQGAHVEGDEISGNELKSKFYEEIKAAIQDSASAFSDIAKTNQ 206
SAAV +KKL +PRLKSWI+ EGDE G ++KSK EE A++ SASA S IAKTNQ
Sbjct: 159 SAAVFVKKLLLPRLKSWIRKVVAEGDENEGRQIKSKIDEETAEAVKASASAVSAIAKTNQ 218
Query: 207 ELLASKDEDKKILTKLAQAFDSQAEAFRSLSDSLNR-------MSENRFYQYNLMEDHFQ 259
ELLASKDE+KKIL L QA DSQA+ +SL +SLN E+RF QY +E+H
Sbjct: 219 ELLASKDEEKKILVTLTQALDSQAKELKSLCESLNHSRDSINITREDRFSQYRALEEHAP 278
Query: 260 SAPWNGPTTNSWRASQQTNAYNTSPRSDFDSGRHPFMPVPGEPSPGAFPARSYVE----- 314
SA NGP WRASQQTN Y P SDF SGR F E +PG+F +RSYVE
Sbjct: 279 SAARNGPVNTPWRASQQTNMYGV-PNSDFGSGRPSFASTHNEATPGSF-SRSYVETSAAH 336
Query: 315 ---------------QQRMQRPGYGFQPQMSNDRWNPGSPLT--NYHGAPPY----QQYH 353
Q QR GYG Q+S+D G P T NY G P Y Q
Sbjct: 337 RGDNRSSGSKPWEMQQYSQQRIGYGSNSQLSDD----GCPETQDNYGGGPSYSYHQNQNQ 392
Query: 354 HGSTNAIDEXXXXXXXXXXXXXXE-----SPFQRRWVPPQPPGVVMPEAVAAIRQPR 405
+G A D E P QRRWVPPQPPGVVMPEAVAAIRQP+
Sbjct: 393 NGKAPAPDIQAEEARPSVYISGAEERSPPPPPQRRWVPPQPPGVVMPEAVAAIRQPK 449
>Os05g0578000 Similar to PEX14 protein
Length = 271
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 29 QPMREDYIQNAVNFLGHPKVKGSPVFYRRSFLEKKGLTKEEIDEAFRR 76
+P+RE+ +Q+AV FL HPKV S RRSFLEKKGLT +EIDEAFRR
Sbjct: 51 EPVREELVQSAVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAFRR 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,661,951
Number of extensions: 704340
Number of successful extensions: 1848
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 3
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)