BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0106200 Os01g0106200|AK060999
         (196 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0106200  Similar to RER1A protein (AtRER1A)                  273   6e-74
Os06g0708300  Retrieval of early ER protein Rer1 family protein   114   6e-26
Os08g0309300  Similar to AtRer1B                                   92   3e-19

>Os01g0106200 Similar to RER1A protein (AtRER1A)
          Length = 196

 Score =  273 bits (698), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 137/152 (90%), Positives = 137/152 (90%)

Query: 27  FQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVTXXXXXXXXXXXXXXXSPMVD 86
           FQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVT               SPMVD
Sbjct: 27  FQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVTYGLGIYLLNLLIGFLSPMVD 86

Query: 87  PEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFWYAITKAFLIAFVMTFFSVFDVPVFW 146
           PEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFWYAITKAFLIAFVMTFFSVFDVPVFW
Sbjct: 87  PEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFWYAITKAFLIAFVMTFFSVFDVPVFW 146

Query: 147 PILLCYWVVLFVLTMKRQIVHMIKYKYVPFSV 178
           PILLCYWVVLFVLTMKRQIVHMIKYKYVPFSV
Sbjct: 147 PILLCYWVVLFVLTMKRQIVHMIKYKYVPFSV 178



>Os06g0708300 Retrieval of early ER protein Rer1 family protein
          Length = 99

 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 58/61 (95%)

Query: 118 FKFWYAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFS 177
           F F YAITKAF +AF+MTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFS
Sbjct: 32  FFFRYAITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFS 91

Query: 178 V 178
           +
Sbjct: 92  I 92



>Os08g0309300 Similar to AtRer1B
          Length = 151

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 57/97 (58%)

Query: 27  FQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVTXXXXXXXXXXXXXXXSPMVD 86
           FQ+ LDRSTPH   RW+    VAA YALRV+   G+YIVT               SP VD
Sbjct: 44  FQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSPQVD 103

Query: 87  PEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFWYA 123
           PE        G ALPTR SDEF+PF+RRLPEFKF + 
Sbjct: 104 PEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHC 140



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.144    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,599,033
Number of extensions: 153963
Number of successful extensions: 404
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 3
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 153 (63.5 bits)