Os06g0708300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrieval of early ER protein Rer1 family protein.
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Os06g0708300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrieval of early ER protein Rer1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.43 | 0.302 | 8.14 | 0.716 | 0.588 | -0.629 | -0.0279 | 1.25 | 0.036 | 11.1 | 22.9 | 934 | -- | -- |
| 42.32 | 0.303 | 8.16 | 0.457 | 0.619 | -0.552 | -0.236 | -- | -0.026 | 11.1 | 21.43 | 928 | -- | -- |
| 41.43 | 0.3 | 8.14 | 0.728 | 0.588 | -0.636 | -- | 1.32 | 0.0368 | 11.1 | 23 | 929 | -- | -- |
| 42.3 | 0.303 | 8.17 | 0.443 | 0.599 | -0.525 | -- | -- | -0.0333 | 11 | 22.4 | 926 | -- | -- |
| 58.79 | 0.357 | 8.13 | 0.989 | -- | -1.07 | -- | 2.38 | 0.107 | -- | 23.8 | 893 | -- | -- |
| 48.95 | 0.328 | 8.19 | 0.277 | 0.738 | -- | -0.101 | -- | -0.134 | 10.9 | -- | -- | -- | -- |
| 49 | 0.328 | 8.19 | 0.273 | 0.739 | -- | -- | -- | -0.134 | 10.9 | -- | -- | -- | -- |
| 61.3 | 0.365 | 8.18 | 0.489 | -- | -0.86 | -- | -- | -0.0176 | -- | 23.43 | 880 | -- | -- |
| 46.62 | 0.318 | 8.18 | -- | 0.629 | -0.429 | -- | -- | -0.089 | 10.8 | 22.08 | 929 | -- | -- |
| 82.84 | 0.425 | 8.21 | 0.257 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 50.95 | 0.334 | 8.2 | -- | 0.736 | -- | -- | -- | -0.164 | 10.9 | -- | -- | -- | -- |
| 67.11 | 0.382 | 8.2 | -- | -- | -0.757 | -- | -- | -0.092 | -- | 23.8 | 871 | -- | -- |
| 84.58 | 0.429 | 8.22 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 39.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 3 | 39.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 4 | 39.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 40.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 7 | 40.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 8 | 40.32 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 18 | 40.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 21 | 40.62 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 22 | 40.62 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 27 | 40.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 28 | 40.67 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 30 | 40.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 31 | 40.68 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 34 | 40.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 35 | 40.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 41 | 40.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 42 | 40.75 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 44 | 40.75 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 45 | 40.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 47 | 40.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 50 | 40.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 52 | 40.83 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 61 | 40.88 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 72 | 40.97 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 86 | 40.98 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 87 | 40.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 90 | 41.01 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 123 | 41.08 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 19 |
| 134 | 41.13 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 159 | 41.16 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 169 | 41.19 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 172 | 41.20 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 186 | 41.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 189 | 41.26 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 190 | 41.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 201 | 41.29 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 217 | 41.33 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 241 | 41.34 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 251 | 41.37 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 252 | 41.37 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 259 | 41.38 | radiation | 20.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 260 | 41.38 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 265 | 41.39 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 287 | 41.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 290 | 41.40 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 317 | 41.42 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 322 | 41.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 19 |
| 326 | 41.43 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 364 | 41.46 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 373 | 41.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 374 | 41.47 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 383 | 41.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 384 | 41.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 426 | 41.52 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 445 | 41.53 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 459 | 41.53 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 471 | 41.56 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 473 | 41.56 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 498 | 41.57 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 500 | 41.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 501 | 41.58 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 503 | 41.58 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 510 | 41.59 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 537 | 41.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 559 | 41.61 | radiation | 40.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 560 | 41.61 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 564 | 41.62 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 595 | 41.64 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 602 | 41.64 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 608 | 41.65 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 624 | 41.65 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 701 | 41.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 707 | 41.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 731 | 41.69 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 754 | 41.70 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 796 | 41.72 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 798 | 41.73 | radiation | 40.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 808 | 41.73 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 816 | 41.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 831 | 41.74 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 847 | 41.75 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 853 | 41.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 907 | 41.77 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 20 |
| 922 | 41.78 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 933 | 41.78 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 986 | 41.80 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 989 | 41.81 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 1 |