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Os01g0106200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RER1A protein (AtRER1A).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0157) R2 : 3.17e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00397 (0.0331) R2dN8 : 4.09e-05 R2N8 : 3.17e-05
σ : 0.296
deviance : 40.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.02 0.27 11.5 0.311 0.0162 0.19 -0.455 2.48 0.0649 13.5 30.36 723 -- --
33.32 0.269 11.6 0.0796 0.00936 0.456 -0.501 -- 0.064 12.5 30.58 704 -- --
33.82 0.271 11.5 0.313 0.0244 0.177 -- 2.6 0.0654 12.4 30.3 745 -- --
34.17 0.272 11.6 0.0514 0.0272 0.461 -- -- 0.0645 10.4 30.53 728 -- --
33.85 0.271 11.5 0.322 -- 0.164 -- 2.69 0.0632 -- 30.34 737 -- --
38.51 0.291 11.6 0.138 0.0662 -- 0.524 -- 0.0102 21.9 -- -- -- --
39.28 0.293 11.6 0.12 0.1 -- -- -- 0.0111 18.8 -- -- -- --
34.21 0.272 11.6 0.0497 -- 0.456 -- -- 0.0613 -- 30.54 727 -- --
34.21 0.272 11.6 -- 0.0316 0.475 -- -- 0.0559 10 30.4 728 -- --
39.81 0.295 11.6 0.118 -- -- -- -- 0.00914 -- -- -- -- --
39.66 0.295 11.6 -- 0.0989 -- -- -- -0.00233 18.9 -- -- -- --
34.27 0.273 11.6 -- -- 0.465 -- -- 0.0532 -- 30.4 728 -- --
40.17 0.296 11.6 -- -- -- -- -- -0.00397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.14 humidity 70 270 > th dose independent rect. 16 11
2 32.15 temperature 30 270 < th dose independent rect. 16 11
4 32.38 humidity 50 720 > th dose dependent rect. 24 19
5 32.41 humidity 60 270 > th dose dependent rect. 7 20
9 32.49 temperature 30 720 < th dose independent rect. 15 5
11 32.50 radiation 10 270 < th dose dependent rect. 6 21
13 32.51 temperature 30 720 < th dose independent rect. 24 19
15 32.54 humidity 70 1440 > th dose independent rect. 17 1
17 32.59 radiation 10 270 < th dose dependent rect. 8 19
23 32.64 temperature 30 720 < th dose independent rect. 8 19
27 32.66 temperature 30 720 < th dose independent rect. 15 21
29 32.67 humidity 70 90 > th dose independent rect. 9 18
32 32.69 humidity 70 270 > th dose independent rect. 7 20
36 32.73 humidity 90 720 < th dose dependent rect. 12 1
37 32.74 atmosphere 1005 720 > th dose independent rect. 16 2
39 32.75 humidity 70 90 > th dose independent rect. 11 16
74 32.94 temperature 30 720 < th dose independent rect. 8 11
77 32.95 temperature 30 720 < th dose independent rect. 7 13
79 32.95 humidity 60 720 > th dose independent rect. 24 19
87 32.98 humidity 70 270 > th dose independent sin 16 NA
97 33.01 temperature 30 720 > th dose independent rect. 10 8
132 33.06 temperature 30 720 < th dose independent rect. 16 23
134 33.07 temperature 30 720 > th dose independent sin 21 NA
137 33.07 temperature 30 720 > th dose independent rect. 16 23
145 33.08 radiation 1 270 < th dose independent rect. 6 21
149 33.09 humidity 60 720 < th dose independent rect. 13 2
150 33.09 temperature 15 1440 > th dose independent rect. 10 3
179 33.09 temperature 30 720 > th dose independent rect. 12 23
199 33.10 radiation 10 270 < th dose dependent rect. 14 13
210 33.12 temperature 30 720 > th dose independent no NA NA
303 33.12 humidity 50 270 > th dose dependent rect. 16 11
308 33.13 radiation 10 270 < th dose independent rect. 15 12
326 33.15 humidity 80 720 < th dose dependent rect. 12 10
356 33.18 temperature 10 270 > th dose dependent rect. 3 15
360 33.18 humidity 80 720 < th dose dependent rect. 12 21
361 33.19 temperature 15 1440 > th dose independent rect. 10 5
382 33.20 temperature 30 720 < th dose independent no NA NA
385 33.20 humidity 60 720 > th dose independent rect. 11 16
402 33.22 temperature 30 720 < th dose independent sin 20 NA
408 33.22 temperature 30 720 < th dose independent rect. 3 17
448 33.27 temperature 30 720 > th dose independent rect. 15 2
457 33.28 humidity 70 720 < th dose dependent rect. 12 5
459 33.29 temperature 30 720 > th dose independent rect. 12 2
489 33.31 temperature 30 720 > th dose dependent rect. 13 2
512 33.33 atmosphere 995 90 > th dose dependent rect. 17 10
514 33.33 humidity 50 720 > th dose dependent rect. 7 14
541 33.35 temperature 30 720 > th dose dependent rect. 17 22
544 33.36 humidity 70 1440 < th dose independent rect. 16 2
546 33.36 humidity 60 720 > th dose independent rect. 13 7
557 33.36 temperature 30 720 > th dose dependent sin 0 NA
559 33.36 humidity 50 720 > th dose dependent rect. 15 4
570 33.36 temperature 10 30 > th dose dependent rect. 12 21
618 33.38 humidity 90 10 < th dose dependent rect. 12 21
635 33.39 humidity 80 720 < th dose dependent sin 18 NA
697 33.40 humidity 50 720 > th dose dependent rect. 9 12
735 33.41 temperature 30 720 > th dose dependent no NA NA
865 33.42 humidity 60 720 > th dose independent rect. 22 23
867 33.42 humidity 70 720 < th dose dependent rect. 12 3
979 33.49 humidity 90 720 < th dose dependent rect. 12 3
990 33.50 temperature 30 720 > th dose dependent rect. 14 23