Os08g0309300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AtRer1B.
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Os08g0309300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AtRer1B.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.16 | 0.279 | 10.9 | 0.851 | 0.237 | -0.748 | -0.342 | -1.02 | -0.104 | 6.8 | 0.1597 | 5044 | -- | -- |
| 36.02 | 0.28 | 10.9 | 0.789 | 0.236 | -0.808 | -0.356 | -- | -0.113 | 6.92 | 0.2345 | 5068 | -- | -- |
| 35.44 | 0.277 | 10.9 | 0.846 | 0.237 | -0.752 | -- | -1.04 | -0.104 | 6.49 | 0.1556 | 5044 | -- | -- |
| 36.33 | 0.281 | 10.9 | 0.79 | 0.235 | -0.816 | -- | -- | -0.112 | 6.57 | 0.2168 | 5060 | -- | -- |
| 38.37 | 0.288 | 10.9 | 0.849 | -- | -0.75 | -- | -1 | -0.0995 | -- | 0.1845 | 5038 | -- | -- |
| 44.43 | 0.312 | 10.8 | 0.66 | 0.233 | -- | -0.412 | -- | -0.0339 | 6.73 | -- | -- | -- | -- |
| 44.85 | 0.314 | 10.8 | 0.653 | 0.233 | -- | -- | -- | -0.0331 | 6.49 | -- | -- | -- | -- |
| 39.2 | 0.292 | 10.9 | 0.799 | -- | -0.826 | -- | -- | -0.106 | -- | 0.2255 | 5044 | -- | -- |
| 51.83 | 0.335 | 10.9 | -- | 0.245 | -0.558 | -- | -- | -0.168 | 6.07 | 0.2501 | 5146 | -- | -- |
| 47.66 | 0.323 | 10.8 | 0.659 | -- | -- | -- | -- | -0.0282 | -- | -- | -- | -- | -- |
| 56.08 | 0.35 | 10.9 | -- | 0.241 | -- | -- | -- | -0.106 | 6.34 | -- | -- | -- | -- |
| 54.91 | 0.345 | 10.9 | -- | -- | -0.553 | -- | -- | -0.166 | -- | 0.3091 | 5146 | -- | -- |
| 59.1 | 0.359 | 10.9 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.46 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 4 | 34.62 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 6 | 34.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 25 | 34.98 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 37 | 35.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 50 | 35.12 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 52 | 35.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 55 | 35.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 65 | 35.17 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 67 | 35.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 90 | 35.22 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 107 | 35.24 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 129 | 35.28 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 144 | 35.30 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 167 | 35.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 168 | 35.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 172 | 35.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 176 | 35.35 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 237 | 35.43 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 255 | 35.44 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 297 | 35.48 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 303 | 35.49 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 309 | 35.50 | humidity | 90.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 331 | 35.52 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 358 | 35.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 370 | 35.56 | humidity | 90.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 380 | 35.57 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 388 | 35.58 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 451 | 35.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 457 | 35.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 18 |
| 470 | 35.65 | humidity | 80.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 477 | 35.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 491 | 35.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 505 | 35.67 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 515 | 35.68 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 519 | 35.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 568 | 35.71 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 580 | 35.71 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 15 |
| 587 | 35.72 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 601 | 35.73 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 614 | 35.73 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 640 | 35.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 659 | 35.76 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 660 | 35.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 22 |
| 669 | 35.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 22 |
| 678 | 35.77 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 22 |
| 679 | 35.77 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 689 | 35.77 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 22 |
| 737 | 35.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 748 | 35.82 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 818 | 35.85 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 824 | 35.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 837 | 35.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 858 | 35.87 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 18 |
| 927 | 35.90 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 970 | 35.92 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 989 | 35.92 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 995 | 35.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 21 |