BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0309300 Os08g0309300|Os08g0309300
         (151 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23310.1  | chr2:9917643-9918913 FORWARD LENGTH=213            115   6e-27
AT4G39220.1  | chr4:18264280-18265531 FORWARD LENGTH=192          114   3e-26
AT2G21600.1  | chr2:9243550-9244579 FORWARD LENGTH=196            109   4e-25
AT2G18240.1  | chr2:7935466-7936464 FORWARD LENGTH=222            100   2e-22

>AT2G23310.1 | chr2:9917643-9918913 FORWARD LENGTH=213
          Length = 212

 Score =  115 bits (289), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 3/96 (3%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           +R QHLLD++ PHV  RW+          +RV+F  G+YI+TYA+GIY+LNL+IAFLSPQ
Sbjct: 46  QRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQ 105

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKF 137
            DPE +  L  GG +LPTR SDE+RPFVRRLPEFKF
Sbjct: 106 EDPEAS--LTSGG-SLPTRRSDEYRPFVRRLPEFKF 138



>AT4G39220.1 | chr4:18264280-18265531 FORWARD LENGTH=192
          Length = 191

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           R +QH LD++TPH   RW+          LRV++  G+YI+ Y LGIY+LNLLI FLSP 
Sbjct: 24  RIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPL 83

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPR 143
           VDPE   V    G +LPTR SDEF+PF+RRLPEFKF +   +
Sbjct: 84  VDPEAGGV--SDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTK 123



>AT2G21600.1 | chr2:9243550-9244579 FORWARD LENGTH=196
          Length = 195

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           R +Q+ LD++TPH   RW+          LRV+   G+YI++Y LGIY+LNLLI FLSP 
Sbjct: 24  RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPR 143
           VDPE+ EV    GA LPTR SDEF+PF+RRLPEFKF +   +
Sbjct: 84  VDPEL-EV--SDGATLPTRGSDEFKPFIRRLPEFKFWYSMTK 122



>AT2G18240.1 | chr2:7935466-7936464 FORWARD LENGTH=222
          Length = 221

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           + FQ+ LDRS P++ RRWL           RV+   GY++++Y L  YILNLLI FLSP+
Sbjct: 28  KSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSPK 87

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPR 143
           VDPE+ E L     +LP   SDE++PFVRRLPEFKF +   +
Sbjct: 88  VDPEL-EALDPD--SLPVDESDEYKPFVRRLPEFKFWYAATK 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.147    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,302,845
Number of extensions: 81443
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 4
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)