BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0309300 Os08g0309300|Os08g0309300
         (151 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0309300  Similar to AtRer1B                                  204   3e-53
Os01g0106200  Similar to RER1A protein (AtRER1A)                  122   1e-28

>Os08g0309300 Similar to AtRer1B
          Length = 151

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 100/110 (90%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           RRFQHLLDRSTPHVGRRWL          LRVWFAGGYYIVTYALGIYILNLLIAFLSPQ
Sbjct: 42  RRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPREDLQNLLV 151
           VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPREDLQNLLV
Sbjct: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPREDLQNLLV 151



>Os01g0106200 Similar to RER1A protein (AtRER1A)
          Length = 196

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 68/105 (64%)

Query: 42  RRFQHLLDRSTPHVGRRWLXXXXXXXXXXLRVWFAGGYYIVTYALGIYILNLLIAFLSPQ 101
           R FQ+ LDRSTPH   RW+          LRV+   G+YIVTY LGIY+LNLLI FLSP 
Sbjct: 25  RAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVTYGLGIYLLNLLIGFLSPM 84

Query: 102 VDPEVAEVLGEGGAALPTRASDEFRPFVRRLPEFKFCHCEPREDL 146
           VDPE        G ALPTR SDEF+PF+RRLPEFKF +   +  L
Sbjct: 85  VDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFWYAITKAFL 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.147    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,825,365
Number of extensions: 140751
Number of successful extensions: 378
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)