BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0641500 Os12g0641500|AJ535209
(632 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0641500 SMC protein, N-terminal domain containing protein 1165 0.0
Os05g0497100 Similar to Chromosome condensation protein 135 7e-32
Os02g0133300 Similar to Structural maintenance of chromosom... 67 3e-11
>Os12g0641500 SMC protein, N-terminal domain containing protein
Length = 632
Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/632 (91%), Positives = 578/632 (91%)
Query: 1 YYTFDRALEKAVLYAVGNTLVCDELDEAKTLSWSGERYKVVTVDGILLTKXXXXXXXXXX 60
YYTFDRALEKAVLYAVGNTLVCDELDEAKTLSWSGERYKVVTVDGILLTK
Sbjct: 1 YYTFDRALEKAVLYAVGNTLVCDELDEAKTLSWSGERYKVVTVDGILLTKSGTMTGGISG 60
Query: 61 XXXXRSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLHYLNV 120
RSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLHYLNV
Sbjct: 61 GMAARSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLHYLNV 120
Query: 121 EENNLREKLRRLESEKSNIEEEIDRLEPVKEELETRIGXXXXXXXXXXXXINEIVDRIYK 180
EENNLREKLRRLESEKSNIEEEIDRLEPVKEELETRIG INEIVDRIYK
Sbjct: 121 EENNLREKLRRLESEKSNIEEEIDRLEPVKEELETRIGKKEREVRVLEKKINEIVDRIYK 180
Query: 181 DFSKSVGVKNIREYEERQLKDAQALQERKLSLSNQMSKLKYQLEYEQKRDMQAPIIXXXX 240
DFSKSVGVKNIREYEERQLKDAQALQERKLSLSNQMSKLKYQLEYEQKRDMQAPII
Sbjct: 181 DFSKSVGVKNIREYEERQLKDAQALQERKLSLSNQMSKLKYQLEYEQKRDMQAPIIKLKE 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXQISNQMEELKAEAELQLYSPIFHLKSTSLLRFFHWK 300
QISNQMEELKAEAELQLYSPIFHLKSTSLLRFFHWK
Sbjct: 241 TRESLEKELKSLQERESEARAEAEQISNQMEELKAEAELQLYSPIFHLKSTSLLRFFHWK 300
Query: 301 SKSDECETGIDELKEKNGSVAAALAKLDRQVKSKEGKLVQLRSQEREIHEKCELEQLKLP 360
SKSDECETGIDELKEKNGSVAAALAKLDRQVKSKEGKLVQLRSQEREIHEKCELEQLKLP
Sbjct: 301 SKSDECETGIDELKEKNGSVAAALAKLDRQVKSKEGKLVQLRSQEREIHEKCELEQLKLP 360
Query: 361 TVNDPMDTGSSSQIPILDYSQLSENYLQDMRLSERDKLEAEFKKKIGDLVAQIEHTAPNL 420
TVNDPMDTGSSSQIPILDYSQLSENYLQDMRLSERDKLEAEFKKKIGDLVAQIEHTAPNL
Sbjct: 361 TVNDPMDTGSSSQIPILDYSQLSENYLQDMRLSERDKLEAEFKKKIGDLVAQIEHTAPNL 420
Query: 421 KALDQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYELFMEAFDHISKGIDQIY 480
KALDQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYELFMEAFDHISKGIDQIY
Sbjct: 421 KALDQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYELFMEAFDHISKGIDQIY 480
Query: 481 KELTKSQTHLLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALL 540
KELTKSQTHLLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALL
Sbjct: 481 KELTKSQTHLLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALL 540
Query: 541 FAIHRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCQRVDEQDNGGCGFQSIVISLKDSF 600
FAIHRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCQRVDEQDNGGCGFQSIVISLKDSF
Sbjct: 541 FAIHRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCQRVDEQDNGGCGFQSIVISLKDSF 600
Query: 601 YDKAEALVGVYRDSERCCSRTLTFDLTKYREA 632
YDKAEALVGVYRDSERCCSRTLTFDLTKYREA
Sbjct: 601 YDKAEALVGVYRDSERCCSRTLTFDLTKYREA 632
>Os05g0497100 Similar to Chromosome condensation protein
Length = 421
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 138/226 (61%), Gaps = 21/226 (9%)
Query: 409 LVAQIEHTAPNLKALDQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYELFMEA 468
L A ++ +PNL ++ +Y T R + +++ A +E ++ +Y+++++RR + FM
Sbjct: 211 LEALLKDLSPNLDSIAEYRTKARVYGERVDELNATTQERDDLKKQYDALRKRRLDEFMAG 270
Query: 469 FDHISKGIDQIYKELTKSQTHLLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLS 528
F+ IS + ++Y+ +T LGG A L L + +PF G+ ++ PP K ++++ LS
Sbjct: 271 FNIISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLS 324
Query: 529 GGEKTVAALALLFAIH--RPSPFFILDEVDAALDNLNVAKVAGFIRSKSCQRVDEQDNGG 586
GGEKT+++LAL+FA+H +P+P +++DE+DAALD NV+ V +++ ++
Sbjct: 325 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA-------- 376
Query: 587 CGFQSIVISLKDSFYDKAEALVGVYRDSERCCSRTLTFDLTKYREA 632
Q I+ISL+++ ++ A+ LVG+Y+ C++++T + + E+
Sbjct: 377 ---QFIIISLRNNMFELADRLVGIYKTDN--CTKSITINPGSFAES 417
>Os02g0133300 Similar to Structural maintenance of chromosome 3 (Fragment)
Length = 1201
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 57/198 (28%)
Query: 412 QIEHTAPNLKALDQY-------ETLQRKEKDVMEKFEAARKEELEIADK-----YNSVKQ 459
Q H N KALDQY E LQR R+ EL+ D+ + + Q
Sbjct: 965 QFSHV--NKKALDQYVNFTEQREQLQR------------RRAELDAGDQKIRELISVLDQ 1010
Query: 460 RRYELFMEAFDHISKGIDQIYKELTKSQTHLLGGTAYLNL-----------------ENE 502
R+ E F +++ +++ EL + GG +L + E
Sbjct: 1011 RKDESIERTFKGVARHFREVFSELVQ------GGHGHLVMMRKKDGDADDDDNDEDGPRE 1064
Query: 503 DEPFLHGIKYTAMPPTKRF------RDMEQLSGGEKTVAALALLFAIHR--PSPFFILDE 554
+P KY + F + M+QLSGG+KTV AL L+FAI R P+PF++ DE
Sbjct: 1065 PDPEGRIEKYIGVKVKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDE 1124
Query: 555 VDAALDNLNVAKVAGFIR 572
+DAALD V IR
Sbjct: 1125 IDAALDPQYRTAVGNMIR 1142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,781,437
Number of extensions: 683133
Number of successful extensions: 2440
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2433
Number of HSP's successfully gapped: 4
Length of query: 632
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 525
Effective length of database: 11,448,903
Effective search space: 6010674075
Effective search space used: 6010674075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)