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Os12g0641500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMC protein, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.71 (0.0169) R2 : 1.44e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00287 (0.0355) R2dN8 : 1.85e-05 R2N8 : 1.44e-05
σ : 0.318
deviance : 46.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.75 0.247 8.63 0.684 0.459 0.128 -0.169 3.1 0.128 8.5 29.6 2122 -- --
28.4 0.248 8.68 0.125 0.443 0.417 -0.313 -- 0.111 8.47 30.4 4861 -- --
27.76 0.245 8.63 0.702 0.463 0.155 -- 2.99 0.131 8.48 29.45 2029 -- --
28.59 0.249 8.68 0.119 0.439 0.406 -- -- 0.104 8.62 30.35 4871 -- --
38.09 0.287 8.61 0.941 -- -0.0461 -- 3.3 0.169 -- 29.54 2754 -- --
35.18 0.278 8.7 0.238 0.411 -- -0.339 -- 0.024 8.33 -- -- -- --
35.52 0.279 8.7 0.229 0.41 -- -- -- 0.0245 8.49 -- -- -- --
37.33 0.285 8.7 0.119 -- 0.402 -- -- 0.0687 -- 31 5892 -- --
28.51 0.249 8.7 -- 0.412 0.42 -- -- 0.028 8.47 29.83 6023 -- --
44.95 0.313 8.71 0.231 -- -- -- -- 0.0285 -- -- -- -- --
36.91 0.284 8.7 -- 0.411 -- -- -- -0.000983 8.45 -- -- -- --
37.67 0.286 8.7 -- -- 0.401 -- -- 0.0345 -- 29.8 5830 -- --
46.35 0.318 8.71 -- -- -- -- -- 0.00287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.89 humidity 5e+01 14400 < th dose independent rect. 16 19
2 26.93 humidity 5e+01 14400 > th dose independent rect. 16 18
3 27.00 humidity 5e+01 14400 < th dose dependent rect. 16 1
4 27.09 atmosphere 1e+03 43200 < th dose independent rect. 19 18
6 27.10 humidity 5e+01 14400 > th dose independent rect. 16 1
7 27.10 atmosphere 1e+03 43200 < th dose independent rect. 19 2
8 27.10 atmosphere 1e+03 43200 > th dose independent rect. 19 18
35 27.13 atmosphere 1e+03 43200 < th dose independent rect. 18 15
42 27.14 humidity 5e+01 14400 < th dose independent rect. 16 1
44 27.14 atmosphere 1e+03 43200 > th dose independent rect. 22 15
50 27.15 atmosphere 1e+03 43200 < th dose independent sin 8 NA
55 27.15 atmosphere 1e+03 43200 < th dose independent rect. 23 14
66 27.16 atmosphere 1e+03 43200 > th dose independent sin 8 NA
69 27.16 atmosphere 1e+03 43200 < th dose independent rect. 18 9
70 27.16 humidity 5e+01 14400 > th dose independent rect. 16 13
77 27.16 humidity 5e+01 14400 > th dose independent rect. 16 16
101 27.17 atmosphere 1e+03 43200 < th dose independent rect. 9 18
124 27.18 humidity 5e+01 14400 > th dose independent rect. 16 9
160 27.19 humidity 5e+01 14400 > th dose independent rect. 16 6
162 27.19 atmosphere 1e+03 43200 < th dose independent rect. 24 9
164 27.19 atmosphere 1e+03 43200 > th dose independent rect. 23 10
192 27.19 atmosphere 1e+03 43200 > th dose independent rect. 8 19
209 27.20 atmosphere 1e+03 43200 < th dose independent rect. 24 1
226 27.20 atmosphere 1e+03 43200 > th dose independent rect. 10 17
253 27.21 atmosphere 1e+03 43200 < th dose independent no NA NA
270 27.21 atmosphere 1e+03 43200 > th dose independent rect. 22 19
285 27.21 atmosphere 1e+03 43200 < th dose independent rect. 23 22
299 27.22 atmosphere 1e+03 43200 > th dose independent no NA NA
301 27.22 atmosphere 1e+03 43200 > th dose independent rect. 19 1
335 27.22 atmosphere 1e+03 43200 > th dose independent rect. 22 23
346 27.23 atmosphere 1e+03 43200 > th dose independent rect. 18 9
496 27.27 atmosphere 1e+03 43200 > th dose independent rect. 24 1
529 27.28 atmosphere 1e+03 43200 < th dose independent rect. 23 4
588 27.29 precipitation 1e-01 43200 > th dose dependent rect. 17 2
589 27.29 precipitation 1e-01 43200 > th dose dependent rect. 14 4
596 27.30 atmosphere 1e+03 43200 > th dose independent rect. 23 4
647 27.32 atmosphere 1e+03 43200 > th dose independent rect. 2 1
681 27.33 atmosphere 1e+03 43200 < th dose independent rect. 2 1
761 27.36 atmosphere 1e+03 43200 > th dose independent rect. 12 1
810 27.39 atmosphere 1e+03 43200 > th dose independent rect. 10 7
827 27.39 precipitation 1e-01 43200 > th dose dependent rect. 20 1
828 27.39 atmosphere 1e+03 43200 < th dose dependent rect. 11 17
837 27.40 atmosphere 1e+03 43200 < th dose independent rect. 11 6
848 27.40 atmosphere 1e+03 43200 < th dose dependent rect. 12 15
863 27.41 atmosphere 1e+03 43200 < th dose dependent rect. 13 13
880 27.42 atmosphere 1e+03 43200 < th dose dependent sin 17 NA
912 27.44 atmosphere 1e+03 43200 < th dose dependent rect. 18 1
978 27.48 atmosphere 1e+03 43200 < th dose dependent rect. 15 7