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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0497100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chromosome condensation protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.73 (0.0295) R2 : 0.447
β1 : 1.59 (0.108) R2dD : 0.283 R2D : 0.232
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.03 (0.132) R2dE : 0.0914 R2E : 0.0262
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.722 (0.0663) R2dN8 : 0.221 R2N8 : -0.0105
σ : 0.542
deviance : 135.43
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.92
memory length : 1437
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.28 0.536 4.75 1.68 0.198 1.05 0.947 -0.737 0.742 19 90.18 1500 -- --
131.2 0.533 4.74 1.6 0.193 1.02 0.956 -- 0.725 18.9 90.6 1495 -- --
132.3 0.536 4.75 1.67 0.201 1.04 -- -0.724 0.737 20.6 90.52 1464 -- --
133.1 0.537 4.74 1.59 0.201 1.03 -- -- 0.723 21 90.87 1437 -- --
134.57 0.54 4.75 1.66 -- 1.05 -- -0.713 0.728 -- 90.61 1445 -- --
149.66 0.574 4.78 1.79 0.195 -- 0.839 -- 0.537 19.2 -- -- -- --
151.09 0.576 4.78 1.76 0.21 -- -- -- 0.536 20.9 -- -- -- --
135.43 0.542 4.73 1.59 -- 1.03 -- -- 0.722 -- 90.92 1437 -- --
196.47 0.653 4.75 -- 0.232 1.44 -- -- 0.692 20.2 90.97 1510 -- --
153.59 0.579 4.78 1.76 -- -- -- -- 0.535 -- -- -- -- --
233.17 0.714 4.83 -- 0.209 -- -- -- 0.34 21.5 -- -- -- --
198.55 0.656 4.75 -- -- 1.42 -- -- 0.638 -- 91 1500 -- --
235.74 0.717 4.82 -- -- -- -- -- 0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.00 humidity 60.0 43200 < th dose dependent rect. 14 2
2 125.02 wind 1.0 14400 < th dose independent rect. 2 1
4 125.41 humidity 90.0 14400 < th dose independent rect. 5 2
5 125.56 humidity 90.0 14400 < th dose independent rect. 4 4
8 126.21 wind 1.0 14400 > th dose independent rect. 2 1
11 126.39 humidity 60.0 43200 < th dose independent rect. 15 21
12 126.52 humidity 60.0 43200 > th dose independent rect. 16 19
15 126.59 wind 1.0 43200 < th dose dependent rect. 2 2
19 126.78 humidity 80.0 14400 > th dose independent rect. 12 15
20 126.78 humidity 60.0 43200 < th dose independent rect. 16 19
21 126.79 humidity 80.0 14400 > th dose independent rect. 10 20
61 127.25 humidity 60.0 43200 < th dose dependent rect. 14 14
65 127.27 humidity 60.0 43200 < th dose dependent rect. 14 11
87 127.42 humidity 80.0 14400 > th dose independent rect. 21 22
95 127.53 wind 1.0 43200 < th dose dependent rect. 2 4
98 127.56 humidity 60.0 43200 < th dose dependent sin 17 NA
100 127.57 humidity 50.0 43200 > th dose independent rect. 15 1
109 127.62 temperature 20.0 4320 > th dose independent rect. 12 10
120 127.68 temperature 20.0 4320 > th dose independent rect. 15 7
126 127.72 wind 9.0 14400 > th dose dependent rect. 14 1
138 127.79 temperature 20.0 4320 < th dose dependent rect. 21 1
145 127.86 precipitation 0.1 43200 > th dose dependent rect. 3 1
147 127.87 humidity 80.0 14400 > th dose independent sin 17 NA
148 127.87 humidity 90.0 14400 > th dose independent rect. 5 3
158 127.94 humidity 80.0 14400 < th dose independent rect. 10 21
167 127.96 humidity 80.0 14400 > th dose dependent rect. 24 10
170 128.00 humidity 80.0 14400 < th dose independent rect. 12 15
171 128.00 humidity 50.0 14400 > th dose dependent rect. 24 1
192 128.07 humidity 50.0 43200 > th dose independent rect. 14 4
226 128.22 temperature 20.0 4320 < th dose dependent rect. 16 6
228 128.23 temperature 20.0 4320 < th dose independent rect. 13 9
239 128.27 temperature 20.0 4320 < th dose independent rect. 15 7
249 128.32 wind 1.0 43200 > th dose independent rect. 10 1
266 128.37 humidity 60.0 43200 > th dose independent sin 11 NA
287 128.42 humidity 80.0 14400 > th dose dependent rect. 5 3
298 128.45 humidity 80.0 14400 > th dose dependent sin 7 NA
318 128.52 humidity 60.0 43200 < th dose independent sin 11 NA
344 128.58 humidity 60.0 43200 > th dose independent rect. 24 12
354 128.63 humidity 90.0 4320 < th dose independent rect. 1 1
363 128.65 humidity 80.0 14400 > th dose dependent rect. 3 7
366 128.67 humidity 70.0 14400 > th dose dependent rect. 21 5
372 128.69 humidity 50.0 14400 > th dose dependent rect. 21 5
404 128.75 humidity 60.0 43200 < th dose independent sin 7 NA
428 128.79 humidity 80.0 14400 > th dose dependent rect. 14 18
429 128.80 humidity 80.0 14400 < th dose independent rect. 21 21
432 128.80 humidity 80.0 14400 > th dose dependent rect. 23 16
433 128.81 humidity 80.0 14400 > th dose independent rect. 4 23
454 128.84 humidity 60.0 43200 > th dose independent rect. 3 9
482 128.87 humidity 60.0 43200 > th dose independent sin 8 NA
483 128.87 humidity 80.0 14400 > th dose independent no NA NA
487 128.87 humidity 80.0 14400 > th dose independent rect. 12 23
490 128.88 humidity 60.0 43200 > th dose independent rect. 8 4
518 128.92 humidity 80.0 14400 < th dose independent sin 17 NA
526 128.93 humidity 50.0 43200 > th dose independent rect. 14 14
541 128.95 humidity 70.0 14400 > th dose dependent rect. 20 7
547 128.96 humidity 80.0 14400 > th dose independent rect. 2 23
580 128.98 humidity 90.0 1440 > th dose independent rect. 16 11
589 128.99 humidity 90.0 1440 > th dose independent rect. 9 18
610 129.02 humidity 60.0 43200 < th dose dependent rect. 3 15
612 129.02 humidity 60.0 43200 < th dose dependent rect. 24 18
615 129.03 humidity 80.0 14400 > th dose independent rect. 10 1
634 129.05 precipitation 0.1 43200 > th dose independent rect. 3 1
641 129.05 humidity 70.0 43200 < th dose dependent rect. 17 18
727 129.15 humidity 70.0 43200 < th dose dependent rect. 9 1
805 129.22 precipitation 0.1 43200 < th dose independent rect. 3 1
808 129.22 precipitation 0.1 43200 < th dose dependent rect. 3 1
859 129.26 humidity 60.0 43200 < th dose dependent rect. 3 23
861 129.27 humidity 60.0 43200 < th dose dependent no NA NA
864 129.27 humidity 70.0 43200 < th dose dependent rect. 8 4
898 129.29 humidity 80.0 14400 > th dose independent rect. 15 23
908 129.31 humidity 90.0 14400 < th dose independent rect. 19 14
918 129.32 wind 9.0 14400 > th dose independent rect. 14 1
951 129.36 humidity 90.0 1440 > th dose independent rect. 22 4
963 129.37 humidity 80.0 14400 > th dose dependent rect. 9 23
979 129.40 humidity 80.0 14400 > th dose dependent no NA NA
984 129.41 humidity 80.0 14400 > th dose independent rect. 15 1
996 129.42 humidity 80.0 14400 > th dose dependent rect. 3 23