BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0497100 Os05g0497100|AJ488495
(421 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0497100 Similar to Chromosome condensation protein 799 0.0
Os12g0641500 SMC protein, N-terminal domain containing protein 135 8e-32
Os02g0133300 Similar to Structural maintenance of chromosom... 69 5e-12
Os01g0904400 Similar to Chromosome assembly protein homolog 67 4e-11
>Os05g0497100 Similar to Chromosome condensation protein
Length = 421
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/421 (93%), Positives = 393/421 (93%)
Query: 1 MFQQAQRSELQQKIENAGGQVLKDQKLKVANIQSQLDKTSSDINRHKVRITTCEKLVKKL 60
MFQQAQRSELQQKIENAGGQVLKDQKLKVANIQSQLDKTSSDINRHKVRITTCEKLVKKL
Sbjct: 1 MFQQAQRSELQQKIENAGGQVLKDQKLKVANIQSQLDKTSSDINRHKVRITTCEKLVKKL 60
Query: 61 TKGIXXXXXXXXXXXXXXXXMMSIFKEIEKAAFTVQEDYKKTQEMMDNHKDELDKTKVEY 120
TKGI MMSIFKEIEKAAFTVQEDYKKTQEMMDNHKDELDKTKVEY
Sbjct: 61 TKGIEESRKEKEKLLAEKEKMMSIFKEIEKAAFTVQEDYKKTQEMMDNHKDELDKTKVEY 120
Query: 121 NKLKKAMDELRSSEVDVEYKLQDTKKLAKEWEMKVKAFRKKLDDIQTNLVKHMDQIQKDA 180
NKLKKAMDELRSSEVDVEYKLQDTKKLAKEWEMKVKAFRKKLDDIQTNLVKHMDQIQKDA
Sbjct: 121 NKLKKAMDELRSSEVDVEYKLQDTKKLAKEWEMKVKAFRKKLDDIQTNLVKHMDQIQKDA 180
Query: 181 IDHEKLKETLSDEQFNEACDMRKXXXXXXXXXXXXKDLSPNLDSIAEYRTKARVYGERVD 240
IDHEKLKETLSDEQFNEACDMRK KDLSPNLDSIAEYRTKARVYGERVD
Sbjct: 181 IDHEKLKETLSDEQFNEACDMRKAVEMVALLEALLKDLSPNLDSIAEYRTKARVYGERVD 240
Query: 241 ELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISLKLKEMYQMITLGGDAELELVDSLD 300
ELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISLKLKEMYQMITLGGDAELELVDSLD
Sbjct: 241 ELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISLKLKEMYQMITLGGDAELELVDSLD 300
Query: 301 PFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFK 360
PFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFK
Sbjct: 301 PFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFK 360
Query: 361 NVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAESMKV 420
NVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAESMKV
Sbjct: 361 NVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAESMKV 420
Query: 421 V 421
V
Sbjct: 421 V 421
>Os12g0641500 SMC protein, N-terminal domain containing protein
Length = 632
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 134/218 (61%), Gaps = 21/218 (9%)
Query: 219 SPNLDSIAEYRTKARVYGERVDELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISLKL 278
+PNL ++ +Y T R + +++ A +E ++ +Y+++++RR + FM F+ IS +
Sbjct: 417 APNLKALDQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYELFMEAFDHISKGI 476
Query: 279 KEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSS 332
++Y+ +T LGG A L L + +PF G+ ++ PP K ++++ LSGGEKT+++
Sbjct: 477 DQIYKELTKSQTHLLGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAA 536
Query: 333 LALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA-----------QFIII 381
LAL+FA+H +P+P +++DE+DAALD NV+ V +++ ++ Q I+I
Sbjct: 537 LALLFAIH--RPSPFFILDEVDAALDNLNVAKVAGFIRSKSCQRVDEQDNGGCGFQSIVI 594
Query: 382 SLRNNMFELADRLVGIYKTDN--CTKSITINPGSFAES 417
SL+++ ++ A+ LVG+Y+ C++++T + + E+
Sbjct: 595 SLKDSFYDKAEALVGVYRDSERCCSRTLTFDLTKYREA 632
>Os02g0133300 Similar to Structural maintenance of chromosome 3 (Fragment)
Length = 1201
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 314 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT 373
K +++ LSGG+KT+ +L L+FA+ P P Y+ DEIDAALD + + VG+ ++
Sbjct: 1086 KGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLA 1145
Query: 374 --KDAQFIIISLRNNMFELADRLVGI 397
D QFI + R + ++AD++ G+
Sbjct: 1146 DMADTQFIATTFRPEIAKVADKIYGV 1171
>Os01g0904400 Similar to Chromosome assembly protein homolog
Length = 1175
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
Query: 299 LDPFSEGVVF----SVRPPKKS-WK-NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDE 352
LDP EG F VR + WK +++ LSGG+++L +L+L+ AL +KP PLY++DE
Sbjct: 1054 LDP-PEGGTFLDGLEVRVAFGTVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDE 1112
Query: 353 IDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELAD 392
+DAALD + +G +K +QFI++SL+ MF A+
Sbjct: 1113 VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNAN 1152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,481,336
Number of extensions: 426269
Number of successful extensions: 1846
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1835
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)