BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0628400 Os12g0628400|AK061110
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0628400 Fatty acid hydroxylase domain containing protein 492 e-139
Os03g0780800 Fatty acid hydroxylase domain containing protein 391 e-109
>Os12g0628400 Fatty acid hydroxylase domain containing protein
Length = 238
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL 60
MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL
Sbjct: 1 MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL 60
Query: 61 IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY 120
IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY
Sbjct: 61 IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY 120
Query: 121 LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT 180
LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT
Sbjct: 121 LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT 180
Query: 181 HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKSS 238
HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKSS
Sbjct: 181 HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKSS 238
>Os03g0780800 Fatty acid hydroxylase domain containing protein
Length = 237
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 180/237 (75%), Positives = 201/237 (84%)
Query: 1 MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL 60
MV + FTVDLN+PLVFQVGHL E+YQEWVHQPIVSKEGPR F NDVLEFLTRT+W+A+P
Sbjct: 1 MVVQEFTVDLNKPLVFQVGHLEERYQEWVHQPIVSKEGPRFFGNDVLEFLTRTKWFAVPT 60
Query: 61 IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY 120
IWLPVVCW L KS+ MGHT+ EV LM +FGI +WTLIEY +HRFLFHI TK+YW NTAHY
Sbjct: 61 IWLPVVCWLLVKSIRMGHTIQEVGLMALFGIFIWTLIEYTLHRFLFHIETKTYWANTAHY 120
Query: 121 LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT 180
LLHG HHKHP D LRLVFPP A AILC PFW L+ TPT T +FGGGLLGYVMYDCT
Sbjct: 121 LLHGCHHKHPMDSLRLVFPPTATAILCVPFWKLVAFFATPTITPALFGGGLLGYVMYDCT 180
Query: 181 HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKS 237
HYYLHHGQPS +P K+LK+YHLNHHFRIQNKGFGITS+LWD+VFGTLP +KT K +
Sbjct: 181 HYYLHHGQPSKEPAKNLKRYHLNHHFRIQNKGFGITSSLWDYVFGTLPPSKTTGKNN 237
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,207,802
Number of extensions: 407004
Number of successful extensions: 915
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)