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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0628400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Fatty acid hydroxylase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0359) R2 : 0.645
β1 : -3.78 (0.15) R2dD : 0.704 R2D : 0.316
β2 : 0.724 (0.0865) R2dC : 0.0548 R2C : 0.0189
β3 : -1.79 (0.161) R2dE : 0.145 R2E : -0.265
β4 : -3.1 (0.353) R2dD*C : 0.0603 R2D*C : 0.0441
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.943 (0.0829) R2dN8 : 0.166 R2N8 : -0.0618
σ : 0.655
deviance : 197.73
__
_____
C
peak time of C : 14.7
E
wheather : temperature
threshold : 29.8
memory length : 5058
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.71 0.661 4.94 -3.75 0.723 -1.8 -3.1 -0.15 -0.937 14.7 29.7 5055 -- --
197.73 0.655 4.95 -3.78 0.724 -1.79 -3.1 -- -0.943 14.7 29.8 5058 -- --
227.65 0.708 5.02 -4.02 0.342 -1.52 -- 3.96 -1.04 18.4 29.7 5055 -- --
227.19 0.702 5 -4.12 0.801 -1.88 -- -- -1.19 15.5 114.1 11097 -- --
233.38 0.715 5.02 -4.04 -- -1.65 -- 3.87 -1.07 -- 29.7 5055 -- --
251.13 0.743 4.86 -2.92 0.672 -- -3.13 -- -0.546 14.8 -- -- -- --
283.14 0.788 4.87 -3 0.699 -- -- -- -0.563 15.8 -- -- -- --
254.78 0.747 4.94 -3.39 -- -1.64 -- -- -0.891 -- 29.7 5055 -- --
519.62 1.07 4.8 -- 0.728 -0.113 -- -- -0.242 15.8 114.1 11097 -- --
310.1 0.823 4.87 -3.03 -- -- -- -- -0.581 -- -- -- -- --
519.76 1.07 4.8 -- 0.758 -- -- -- -0.229 15.7 -- -- -- --
446.93 0.985 4.68 -- -- 1.64 -- -- 0.247 -- 95.28 47520 -- --
551.52 1.1 4.79 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.39 precipitation 0.1 43200 < th dose independent rect. 17 2
2 185.39 precipitation 0.1 43200 < th dose dependent rect. 17 2
3 185.54 precipitation 0.1 43200 > th dose independent rect. 17 2
4 186.22 precipitation 0.1 43200 > th dose dependent rect. 14 5
5 186.76 radiation 10.0 14400 < th dose independent rect. 16 14
7 187.42 precipitation 0.1 43200 > th dose dependent rect. 11 8
8 187.48 precipitation 0.1 43200 > th dose independent rect. 14 4
11 187.51 precipitation 0.1 43200 < th dose independent rect. 14 4
12 187.51 precipitation 0.1 43200 < th dose dependent rect. 14 4
26 187.86 radiation 10.0 14400 < th dose independent rect. 16 3
37 187.92 humidity 90.0 43200 < th dose independent rect. 19 2
48 188.56 precipitation 0.1 43200 > th dose dependent rect. 14 8
53 188.82 precipitation 0.1 43200 > th dose dependent rect. 17 5
56 188.88 wind 1.0 43200 < th dose dependent rect. 20 1
72 189.18 radiation 10.0 14400 < th dose independent rect. 14 16
76 189.32 humidity 90.0 43200 > th dose dependent rect. 21 1
83 189.50 precipitation 0.1 43200 > th dose dependent rect. 11 11
84 189.64 humidity 90.0 43200 > th dose independent rect. 20 2
87 189.72 radiation 10.0 4320 < th dose dependent rect. 18 1
102 189.95 radiation 10.0 14400 > th dose dependent rect. 17 13
113 190.07 humidity 80.0 43200 < th dose independent rect. 6 2
119 190.10 precipitation 0.1 43200 < th dose independent rect. 17 5
120 190.10 precipitation 0.1 43200 < th dose dependent rect. 17 5
125 190.23 radiation 1.0 14400 > th dose dependent rect. 18 1
136 190.25 precipitation 0.1 43200 > th dose independent rect. 17 5
138 190.29 radiation 10.0 14400 < th dose dependent rect. 18 11
140 190.32 radiation 10.0 14400 < th dose independent rect. 14 5
145 190.34 precipitation 0.1 43200 < th dose independent rect. 14 8
152 190.34 precipitation 0.1 43200 < th dose dependent rect. 14 8
159 190.43 precipitation 0.1 43200 > th dose independent rect. 14 8
169 190.51 radiation 10.0 4320 < th dose dependent rect. 18 4
174 190.57 radiation 10.0 14400 < th dose independent sin 14 NA
179 190.59 radiation 30.0 14400 < th dose independent rect. 15 17
184 190.64 humidity 80.0 43200 > th dose dependent rect. 18 1
230 190.93 humidity 90.0 43200 > th dose independent rect. 9 1
236 191.01 humidity 90.0 43200 < th dose independent rect. 22 1
247 191.13 humidity 60.0 43200 > th dose independent rect. 15 2
275 191.26 humidity 90.0 43200 > th dose dependent rect. 19 3
281 191.33 radiation 10.0 14400 > th dose dependent rect. 16 15
315 191.73 humidity 70.0 14400 < th dose independent rect. 19 1
322 191.78 precipitation 0.1 43200 < th dose independent rect. 20 1
324 191.78 precipitation 0.1 43200 < th dose dependent rect. 20 1
326 191.79 precipitation 0.1 43200 > th dose dependent sin 19 NA
355 191.96 wind 9.0 43200 > th dose independent rect. 19 2
358 191.98 humidity 60.0 43200 < th dose independent rect. 15 1
384 192.10 precipitation 0.1 43200 > th dose dependent rect. 20 2
392 192.20 humidity 90.0 43200 < th dose independent rect. 9 1
393 192.22 precipitation 0.1 43200 > th dose independent rect. 20 1
394 192.23 wind 9.0 43200 < th dose independent rect. 19 2
402 192.31 humidity 70.0 14400 < th dose independent rect. 19 12
413 192.36 radiation 40.0 14400 < th dose independent rect. 13 20
421 192.43 temperature 30.0 270 < th dose dependent rect. 11 21
441 192.60 radiation 20.0 14400 > th dose dependent rect. 15 17
484 192.75 atmosphere 1005.0 43200 > th dose independent rect. 17 2
504 192.83 atmosphere 1005.0 43200 < th dose independent rect. 17 2
534 193.15 radiation 40.0 14400 < th dose independent sin 13 NA
554 193.27 temperature 10.0 14400 > th dose dependent rect. 1 1
556 193.29 atmosphere 1000.0 43200 < th dose dependent rect. 3 2
563 193.35 humidity 80.0 43200 > th dose dependent rect. 10 1
567 193.36 temperature 30.0 14400 < th dose dependent rect. 1 1
578 193.47 radiation 10.0 14400 < th dose independent rect. 14 1
595 193.55 wind 9.0 43200 > th dose dependent rect. 19 4
619 193.64 wind 9.0 43200 > th dose dependent rect. 19 11
656 193.82 temperature 30.0 270 < th dose dependent rect. 13 19
657 193.83 radiation 40.0 14400 < th dose independent rect. 6 3
665 193.85 temperature 10.0 14400 > th dose dependent rect. 3 1
668 193.87 temperature 30.0 14400 < th dose dependent rect. 3 1
670 193.88 radiation 40.0 14400 < th dose independent rect. 2 7
696 193.92 radiation 30.0 14400 < th dose independent rect. 22 11
724 193.99 temperature 10.0 14400 > th dose dependent rect. 21 7
733 194.02 temperature 30.0 14400 < th dose dependent rect. 21 7
750 194.07 wind 9.0 43200 > th dose dependent rect. 19 2
829 194.26 radiation 1.0 14400 > th dose independent rect. 17 2
847 194.28 radiation 30.0 14400 > th dose independent rect. 7 1
883 194.37 humidity 90.0 43200 < th dose independent rect. 9 14
902 194.43 temperature 25.0 720 > th dose independent rect. 8 16
929 194.51 wind 9.0 43200 > th dose dependent rect. 19 6
942 194.54 radiation 40.0 14400 < th dose independent rect. 13 3
947 194.54 radiation 20.0 14400 < th dose dependent rect. 17 13
980 194.64 temperature 10.0 14400 > th dose dependent rect. 22 1
983 194.64 radiation 1.0 14400 < th dose dependent rect. 18 16
1000 194.67 temperature 30.0 14400 < th dose dependent rect. 22 1