BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0628400 Os12g0628400|AK061110
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34770.1 | chr2:14666776-14668061 FORWARD LENGTH=238 358 1e-99
AT4G20870.1 | chr4:11174620-11175878 REVERSE LENGTH=238 350 3e-97
>AT2G34770.1 | chr2:14666776-14668061 FORWARD LENGTH=238
Length = 237
Score = 358 bits (919), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 164/237 (69%), Positives = 194/237 (81%)
Query: 1 MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL 60
MVA+ FTVDL +PLVFQVGHLGE Y+EWVHQPI +KEGPR F +D EFLT T WWA+P+
Sbjct: 1 MVAQGFTVDLKKPLVFQVGHLGEDYEEWVHQPIATKEGPRFFQSDFWEFLTLTVWWAVPV 60
Query: 61 IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY 120
IWLPVV WC+++SV MG +L E+ +VV GI +WT EY++HRF+FHI TKSYW NTAHY
Sbjct: 61 IWLPVVVWCISRSVSMGCSLPEIVPIVVMGIFIWTFFEYVLHRFVFHIKTKSYWGNTAHY 120
Query: 121 LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT 180
L+HG HHKHP D LRLVFPP A AILCFPFWN+ + I+TP+T +FGGG+LGYVMYD T
Sbjct: 121 LIHGCHHKHPMDHLRLVFPPTATAILCFPFWNIAKAISTPSTAPALFGGGMLGYVMYDVT 180
Query: 181 HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKS 237
HYYLHH QP+ K+LKKYHLNHHFRIQ+KGFGITS+LWD VFGTLP+TK K+
Sbjct: 181 HYYLHHAQPTRPVTKNLKKYHLNHHFRIQDKGFGITSSLWDIVFGTLPTTKAPRKEQ 237
>AT4G20870.1 | chr4:11174620-11175878 REVERSE LENGTH=238
Length = 237
Score = 350 bits (899), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 165/237 (69%), Positives = 184/237 (77%)
Query: 1 MVAEAFTVDLNEPLVFQVGHLGEQYQEWVHQPIVSKEGPRLFANDVLEFLTRTEWWAIPL 60
MVAE +TVDLN+PLVFQVGHLGE+YQEW+HQPIV EGPR F +D EFLTRT WWAIP
Sbjct: 1 MVAERYTVDLNKPLVFQVGHLGEEYQEWIHQPIVCVEGPRFFESDFWEFLTRTVWWAIPT 60
Query: 61 IWLPVVCWCLTKSVEMGHTLSEVALMVVFGICLWTLIEYIMHRFLFHINTKSYWTNTAHY 120
IWLPVVC+ L+ S G T ++ L+V FG+ WTL+EY +HRFLFHI TKSYW NTAHY
Sbjct: 61 IWLPVVCYVLSISASKGLTFPQIGLIVAFGVLTWTLLEYTLHRFLFHIQTKSYWANTAHY 120
Query: 121 LLHGIHHKHPTDGLRLVFPPAAAAILCFPFWNLIRLITTPTTTHGVFGGGLLGYVMYDCT 180
LLHG HHKHP DGLRLVFPP A AIL P W L+ L+ TP T + GG L GYVMYD T
Sbjct: 121 LLHGCHHKHPQDGLRLVFPPTATAILLVPLWKLLHLLATPATAPAILGGILFGYVMYDIT 180
Query: 181 HYYLHHGQPSSDPGKHLKKYHLNHHFRIQNKGFGITSTLWDHVFGTLPSTKTIDKKS 237
HYYLHHGQP KHLKKYHLNHHFRIQ+KG+GITS+LWD VFGTLP K KKS
Sbjct: 181 HYYLHHGQPKEPTFKHLKKYHLNHHFRIQDKGYGITSSLWDKVFGTLPGIKAAAKKS 237
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,781,894
Number of extensions: 250503
Number of successful extensions: 567
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)