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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0780800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Fatty acid hydroxylase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.97 (0.0459) R2 : 0.66
β1 : -3.72 (0.171) R2dD : 0.376 R2D : 0.222
β2 : 1.25 (0.116) R2dC : 0.0977 R2C : -0.000761
β3 : 3.1 (0.177) R2dE : 0.264 R2E : 0.0272
β4 : -5 (0.442) R2dD*C : 0.0889 R2D*C : 0.103
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.982 (0.0987) R2dN8 : 0.0971 R2N8 : -0.0161
σ : 0.856
deviance : 337.43
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_____
C
peak time of C : 14.1
E
wheather : temperature
threshold : 23.92
memory length : 690
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.98 0.861 5.99 -4 1.28 3.29 -4.96 -2.06 -1.02 14 24.1 696 11.2 --
337.43 0.856 5.97 -3.72 1.25 3.1 -5 -- -0.982 14.1 23.92 690 11.2 --
410.89 0.944 5.92 -3.25 1.66 2.59 -- 3.31 -0.819 15.6 23.9 788 10.3 --
414.81 0.949 5.98 -3.82 1.64 2.92 -- -- -0.947 15.4 24.26 781 10.2 --
491.88 1.03 5.91 -3.73 -- 2.65 -- 0.787 -0.845 -- 25.1 729 14 --
553.77 1.1 5.92 -3.16 1.14 -- -4.88 -- -0.698 15.6 -- -- -- --
591.18 1.14 5.95 -3.25 1.42 -- -- -- -0.722 17.8 -- -- -- --
491.35 1.03 5.96 -3.81 -- 2.59 -- -- -0.845 -- 25.49 798 16.3 --
786.05 1.31 5.88 -- 1.38 2.11 -- -- -0.479 15.8 24.5 749 10.8 --
695.2 1.23 5.93 -3.29 -- -- -- -- -0.755 -- -- -- -- --
868.86 1.38 5.87 -- 1.47 -- -- -- -0.361 17.7 -- -- -- --
848.06 1.36 5.88 -- -- 2.14 -- -- -0.54 -- 22.42 382 11.7 --
980.62 1.46 5.85 -- -- -- -- -- -0.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.62 temperature 25 720 > th dose dependent rect. 13 12
8 337.47 temperature 25 720 > th dose dependent rect. 13 18
22 340.38 temperature 25 720 > th dose dependent sin 17 NA
51 344.47 temperature 25 720 > th dose dependent rect. 15 4
112 352.72 temperature 10 720 > th dose dependent rect. 15 8
204 362.21 temperature 25 720 > th dose independent rect. 15 5
209 362.41 temperature 25 720 > th dose independent rect. 13 9
223 362.62 temperature 25 720 > th dose dependent no NA NA
224 362.66 temperature 25 720 > th dose independent rect. 11 13
236 363.13 temperature 25 720 > th dose independent sin 18 NA
239 363.16 temperature 25 720 > th dose dependent rect. 15 23
346 368.81 temperature 25 720 < th dose independent rect. 14 10
392 370.94 temperature 30 720 < th dose independent rect. 12 19
394 370.98 radiation 1 720 < th dose independent rect. 9 15
422 372.20 radiation 1 720 < th dose dependent rect. 9 16
434 372.70 temperature 30 720 < th dose independent rect. 12 14
453 373.33 temperature 30 720 < th dose independent rect. 12 21
493 374.86 temperature 30 720 < th dose independent sin 16 NA
499 375.02 radiation 10 720 < th dose dependent rect. 5 19
672 380.71 radiation 1 720 < th dose independent sin 19 NA
761 383.30 radiation 1 720 > th dose dependent rect. 16 14
786 383.99 radiation 1 720 < th dose dependent sin 19 NA
847 385.50 radiation 1 720 > th dose independent rect. 17 12
850 385.55 humidity 70 720 > th dose independent rect. 14 10
864 385.81 radiation 1 720 > th dose independent rect. 17 2
895 386.14 humidity 70 720 > th dose independent sin 16 NA
899 386.22 radiation 20 720 < th dose dependent rect. 15 9
901 386.35 temperature 30 720 < th dose independent rect. 17 22
985 387.76 radiation 1 720 < th dose independent rect. 17 8
988 387.80 humidity 70 720 > th dose independent rect. 11 22