BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0780800 Os03g0780800|AK103085
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34770.1 | chr2:14666776-14668061 FORWARD LENGTH=238 355 1e-98
AT4G20870.1 | chr4:11174620-11175878 REVERSE LENGTH=238 354 2e-98
>AT2G34770.1 | chr2:14666776-14668061 FORWARD LENGTH=238
Length = 237
Score = 355 bits (911), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 165/237 (69%), Positives = 190/237 (80%)
Query: 1 MVVQEFTVDLNKPLVFQVGHLEERYQEWVHQPIVSKEGPRFFGNDVLEFLTRTKWFAVPT 60
MV Q FTVDL KPLVFQVGHL E Y+EWVHQPI +KEGPRFF +D EFLT T W+AVP
Sbjct: 1 MVAQGFTVDLKKPLVFQVGHLGEDYEEWVHQPIATKEGPRFFQSDFWEFLTLTVWWAVPV 60
Query: 61 IWLPVVCWLLVKSIRMGHTIQEVGLMALFGIFIWTLIEYTLHRFLFHIETKTYWANTAHY 120
IWLPVV W + +S+ MG ++ E+ + + GIFIWT EY LHRF+FHI+TK+YW NTAHY
Sbjct: 61 IWLPVVVWCISRSVSMGCSLPEIVPIVVMGIFIWTFFEYVLHRFVFHIKTKSYWGNTAHY 120
Query: 121 LLHGCHHKHPMDSLRLVFPPTATAILCVPFWKLVAFFATPTITPALFGGGLLGYVMYDCT 180
L+HGCHHKHPMD LRLVFPPTATAILC PFW + +TP+ PALFGGG+LGYVMYD T
Sbjct: 121 LIHGCHHKHPMDHLRLVFPPTATAILCFPFWNIAKAISTPSTAPALFGGGMLGYVMYDVT 180
Query: 181 HYYLHHGQPSKEPAKNLKRYHLNHHFRIQNKGFGITSSLWDYVFGTLPPSKTTGKNN 237
HYYLHH QP++ KNLK+YHLNHHFRIQ+KGFGITSSLWD VFGTLP +K K
Sbjct: 181 HYYLHHAQPTRPVTKNLKKYHLNHHFRIQDKGFGITSSLWDIVFGTLPTTKAPRKEQ 237
>AT4G20870.1 | chr4:11174620-11175878 REVERSE LENGTH=238
Length = 237
Score = 354 bits (909), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 190/237 (80%)
Query: 1 MVVQEFTVDLNKPLVFQVGHLEERYQEWVHQPIVSKEGPRFFGNDVLEFLTRTKWFAVPT 60
MV + +TVDLNKPLVFQVGHL E YQEW+HQPIV EGPRFF +D EFLTRT W+A+PT
Sbjct: 1 MVAERYTVDLNKPLVFQVGHLGEEYQEWIHQPIVCVEGPRFFESDFWEFLTRTVWWAIPT 60
Query: 61 IWLPVVCWLLVKSIRMGHTIQEVGLMALFGIFIWTLIEYTLHRFLFHIETKTYWANTAHY 120
IWLPVVC++L S G T ++GL+ FG+ WTL+EYTLHRFLFHI+TK+YWANTAHY
Sbjct: 61 IWLPVVCYVLSISASKGLTFPQIGLIVAFGVLTWTLLEYTLHRFLFHIQTKSYWANTAHY 120
Query: 121 LLHGCHHKHPMDSLRLVFPPTATAILCVPFWKLVAFFATPTITPALFGGGLLGYVMYDCT 180
LLHGCHHKHP D LRLVFPPTATAIL VP WKL+ ATP PA+ GG L GYVMYD T
Sbjct: 121 LLHGCHHKHPQDGLRLVFPPTATAILLVPLWKLLHLLATPATAPAILGGILFGYVMYDIT 180
Query: 181 HYYLHHGQPSKEPAKNLKRYHLNHHFRIQNKGFGITSSLWDYVFGTLPPSKTTGKNN 237
HYYLHHGQP + K+LK+YHLNHHFRIQ+KG+GITSSLWD VFGTLP K K +
Sbjct: 181 HYYLHHGQPKEPTFKHLKKYHLNHHFRIQDKGYGITSSLWDKVFGTLPGIKAAAKKS 237
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,781,838
Number of extensions: 243242
Number of successful extensions: 620
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)