BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0628200 Os12g0628200|AK102484
         (328 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0628200  Conserved hypothetical protein                      409   e-114
Os03g0661500  Conserved hypothetical protein                       80   2e-15

>Os12g0628200 Conserved hypothetical protein
          Length = 328

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 229/328 (69%)

Query: 1   MPSPLKRRIPGRLGRLLASLRPPSRAGPLPVQTGFPTSLADLLVKNHDXXXXXXXXXXXX 60
           MPSPLKRRIPGRLGRLLASLRPPSRAGPLPVQTGFPTSLADLLVKNHD            
Sbjct: 1   MPSPLKRRIPGRLGRLLASLRPPSRAGPLPVQTGFPTSLADLLVKNHDRLLLTKPRRRRR 60

Query: 61  XXXXXXXXATASVAAADVETPLPSGREELEEEKVGGVAVRLRPEXXXXXXXXXXXXMVIW 120
                   ATASVAAADVETPLPSGREELEEEKVGGVAVRLRPE            MVIW
Sbjct: 61  PTPPTTTTATASVAAADVETPLPSGREELEEEKVGGVAVRLRPELLGVGAAAALALMVIW 120

Query: 121 SRWLVAAVTVASLSLFWIESVXXXXXXXXXXXXXTPAAETAAELPDLRGRGVVSPIREAA 180
           SRWLVAAVTVASLSLFWIESV             TPAAETAAELPDLRGRGVVSPIREAA
Sbjct: 121 SRWLVAAVTVASLSLFWIESVRSSSSRLRPRPRSTPAAETAAELPDLRGRGVVSPIREAA 180

Query: 181 AATPRPXXXXXXXXXXXXXXXIWTDGDEMSQLVVGDSTTNPTXXXXXXXXXXXXIAKRKE 240
           AATPRP               IWTDGDEMSQLVVGDSTTNPT            IAKRKE
Sbjct: 181 AATPRPSSADSDVGSEVSVSSIWTDGDEMSQLVVGDSTTNPTKRKEKRRWLRKLIAKRKE 240

Query: 241 KKDSSVVSPSHGEVVGNAAAEQQQQPSTSAEPIMAEASPADGRRXXXXXXXXXXXXXXXX 300
           KKDSSVVSPSHGEVVGNAAAEQQQQPSTSAEPIMAEASPADGRR                
Sbjct: 241 KKDSSVVSPSHGEVVGNAAAEQQQQPSTSAEPIMAEASPADGRRGGALPVAAFVPVVLVG 300

Query: 301 XXXXXXXXXXXTVIFAVFFSSVERRSPA 328
                      TVIFAVFFSSVERRSPA
Sbjct: 301 LVGGKLPAVALTVIFAVFFSSVERRSPA 328



>Os03g0661500 Conserved hypothetical protein
          Length = 427

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 43/47 (91%), Gaps = 1/47 (2%)

Query: 1  MPSPLKRRIPGRLGRLLASLRPPSRAGPLPVQTGFPTSLADLLVKNH 47
          MPSPLK R  GRLGRLLA+LRP +RAGPLPVQTGFPTSLADL+VKNH
Sbjct: 1  MPSPLKERPAGRLGRLLAALRP-ARAGPLPVQTGFPTSLADLVVKNH 46



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,511,710
Number of extensions: 276305
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)