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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0628200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0468) R2 : 0.00187
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.091 (0.0985) R2dN8 : 0.00241 R2N8 : 0.00187
σ : 0.881
deviance : 356.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.65 0.857 3.89 -0.25 0.342 -0.0199 -0.407 -3.03 -0.131 13.6 1.364 2050 -- --
342.73 0.862 3.83 -0.103 0.279 -0.409 -0.882 -- -0.116 13.2 0.09935 1701 -- --
331.88 0.848 3.89 -0.182 0.324 0.0449 -- -3.57 -0.106 13.5 2.855 2264 -- --
342.41 0.862 3.8 -0.393 0.385 0.416 -- -- -0.0537 13.5 1.697 8180 -- --
338.26 0.857 3.88 -0.25 -- 0.239 -- -3.89 -0.0703 -- 3.056 2250 -- --
344.95 0.871 3.82 -0.223 0.368 -- -0.537 -- -0.108 13.5 -- -- -- --
346.06 0.871 3.82 -0.24 0.372 -- -- -- -0.111 13.8 -- -- -- --
347.05 0.868 3.81 -0.511 -- 0.833 -- -- -0.0552 -- 4.1 9534 -- --
345.29 0.865 3.81 -- 0.352 0.409 -- -- -0.0385 13.6 3.8 9709 -- --
354.43 0.88 3.83 -0.255 -- -- -- -- -0.119 -- -- -- -- --
347.58 0.872 3.82 -- 0.376 -- -- -- -0.0841 13.8 -- -- -- --
352.13 0.877 3.82 -- -- -0.335 -- -- -0.104 -- 4.1 9534 -- --
356.15 0.881 3.82 -- -- -- -- -- -0.091 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.08 wind 1.0 1440 < th dose dependent rect. 13 2
2 327.51 wind 1.0 1440 < th dose dependent rect. 9 14
8 328.44 wind 3.0 1440 > th dose independent rect. 18 2
9 328.58 wind 1.0 1440 < th dose independent rect. 11 12
10 328.62 wind 1.0 1440 < th dose independent rect. 9 14
12 328.72 wind 3.0 1440 < th dose independent rect. 18 2
13 328.74 wind 1.0 1440 > th dose independent rect. 13 2
16 328.92 wind 3.0 1440 < th dose dependent rect. 18 2
17 328.98 wind 1.0 1440 < th dose dependent rect. 11 5
19 329.02 wind 1.0 1440 < th dose dependent rect. 9 7
20 329.04 wind 3.0 1440 > th dose independent rect. 13 7
22 329.12 wind 1.0 1440 < th dose independent rect. 13 2
26 329.19 wind 1.0 1440 > th dose independent rect. 11 12
27 329.27 wind 1.0 1440 < th dose independent rect. 11 5
29 329.31 wind 1.0 1440 > th dose independent rect. 9 14
34 329.39 humidity 60.0 10 > th dose independent rect. 2 12
42 329.57 wind 3.0 1440 < th dose independent rect. 13 7
50 329.70 wind 1.0 1440 > th dose independent rect. 11 6
56 329.79 wind 5.0 1440 < th dose dependent rect. 14 6
61 329.84 wind 1.0 1440 < th dose independent rect. 11 8
64 329.86 wind 1.0 1440 > th dose independent rect. 11 4
66 329.87 wind 1.0 1440 < th dose independent rect. 9 8
80 329.98 wind 1.0 1440 < th dose independent rect. 9 10
85 330.02 wind 1.0 1440 > th dose independent rect. 9 8
105 330.17 wind 1.0 1440 > th dose independent rect. 11 8
111 330.25 wind 1.0 1440 < th dose independent sin 20 NA
127 330.37 wind 1.0 1440 < th dose dependent sin 21 NA
132 330.40 wind 1.0 1440 > th dose independent sin 20 NA
139 330.43 wind 1.0 1440 > th dose independent rect. 9 10
206 331.04 humidity 60.0 10 > th dose independent rect. 2 22
245 331.38 humidity 90.0 1440 > th dose dependent rect. 3 3
248 331.39 wind 5.0 1440 < th dose dependent rect. 15 2
255 331.45 wind 1.0 1440 < th dose dependent rect. 3 20
260 331.47 humidity 60.0 90 > th dose independent rect. 2 21
277 331.62 wind 1.0 1440 < th dose dependent rect. 3 16
299 331.80 humidity 60.0 10 < th dose independent rect. 11 1
309 331.96 radiation 20.0 30 > th dose independent rect. 12 23
325 332.06 temperature 30.0 720 < th dose independent rect. 2 17
331 332.10 wind 1.0 1440 < th dose independent rect. 4 15
334 332.11 wind 1.0 1440 < th dose dependent rect. 9 22
335 332.12 atmosphere 995.0 720 > th dose independent rect. 14 17
337 332.13 atmosphere 1000.0 30 > th dose independent rect. 11 15
388 332.43 wind 1.0 1440 < th dose independent rect. 4 19
393 332.46 humidity 60.0 10 > th dose independent rect. 7 16
395 332.47 humidity 90.0 1440 > th dose independent rect. 2 5
407 332.52 temperature 15.0 30 > th dose independent rect. 23 13
413 332.54 humidity 60.0 1440 > th dose independent rect. 11 1
423 332.61 radiation 40.0 720 < th dose independent rect. 2 9
445 332.72 humidity 60.0 1440 < th dose independent rect. 11 1
446 332.74 temperature 30.0 270 < th dose independent sin 12 NA
457 332.78 wind 1.0 1440 > th dose independent rect. 4 15
461 332.79 radiation 40.0 720 < th dose independent rect. 7 6
477 332.89 radiation 20.0 30 > th dose independent rect. 15 19
479 332.90 atmosphere 995.0 720 > th dose independent rect. 9 8
488 332.96 wind 1.0 1440 < th dose independent rect. 9 21
503 333.03 temperature 15.0 30 > th dose independent rect. 11 15
504 333.04 wind 1.0 1440 < th dose independent rect. 4 13
518 333.09 radiation 10.0 30 > th dose dependent rect. 12 23
534 333.17 wind 1.0 1440 > th dose independent rect. 4 19
553 333.23 wind 9.0 43200 < th dose independent rect. 21 12
556 333.23 radiation 1.0 10 > th dose dependent rect. 11 1
559 333.24 humidity 60.0 10 > th dose independent rect. 9 14
562 333.24 radiation 1.0 30 > th dose independent rect. 11 20
565 333.25 humidity 70.0 10 < th dose dependent rect. 11 1
572 333.28 wind 7.0 43200 > th dose dependent rect. 2 1
603 333.38 humidity 60.0 10 < th dose independent rect. 17 21
614 333.42 wind 1.0 1440 > th dose independent rect. 9 21
640 333.48 humidity 90.0 1440 > th dose dependent rect. 12 5
641 333.49 humidity 90.0 720 > th dose independent rect. 17 1
648 333.53 humidity 50.0 1440 > th dose dependent rect. 2 6
651 333.54 humidity 90.0 1440 > th dose dependent rect. 14 3
657 333.55 radiation 30.0 720 > th dose dependent rect. 15 18
664 333.57 temperature 30.0 720 < th dose independent rect. 7 22
667 333.59 humidity 90.0 1440 < th dose independent rect. 2 5
675 333.60 wind 1.0 1440 > th dose dependent rect. 15 2
677 333.61 wind 9.0 43200 > th dose independent rect. 21 12
682 333.62 radiation 40.0 720 < th dose independent rect. 17 16
683 333.62 humidity 60.0 10 > th dose independent rect. 2 18
693 333.65 wind 7.0 43200 > th dose independent rect. 2 1
707 333.69 humidity 90.0 720 > th dose independent rect. 15 3
711 333.70 atmosphere 995.0 720 > th dose independent rect. 10 16
716 333.71 wind 1.0 10 > th dose independent rect. 11 20
726 333.75 radiation 40.0 10 > th dose independent rect. 11 1
728 333.75 atmosphere 995.0 720 > th dose independent rect. 14 8
736 333.79 precipitation 0.1 1440 < th dose independent rect. 12 1
741 333.79 atmosphere 995.0 90 > th dose independent rect. 10 23
742 333.79 precipitation 0.1 1440 < th dose dependent rect. 12 1
784 333.85 atmosphere 995.0 720 > th dose independent rect. 24 17
794 333.87 temperature 30.0 720 < th dose independent rect. 1 22
802 333.88 radiation 40.0 720 > th dose dependent rect. 14 21
803 333.89 temperature 15.0 1440 > th dose independent rect. 23 1
817 333.89 humidity 50.0 1440 > th dose independent rect. 19 17
826 333.90 wind 7.0 43200 > th dose dependent rect. 22 11
863 333.97 humidity 60.0 720 > th dose independent rect. 7 7
865 333.97 radiation 40.0 720 < th dose independent rect. 2 17
867 333.97 radiation 10.0 90 > th dose dependent rect. 7 3
868 333.98 humidity 60.0 10 > th dose independent rect. 17 23
872 333.99 wind 7.0 43200 < th dose independent rect. 2 1
873 333.99 humidity 50.0 1440 > th dose independent rect. 3 9
874 333.99 atmosphere 995.0 30 > th dose independent rect. 11 20
896 334.00 wind 7.0 4320 < th dose dependent rect. 4 1
899 334.01 radiation 40.0 30 < th dose independent sin 12 NA
901 334.01 humidity 60.0 10 > th dose independent rect. 7 13
906 334.02 radiation 20.0 90 > th dose independent rect. 6 4
981 334.19 humidity 90.0 1440 > th dose dependent rect. 15 1
988 334.21 radiation 10.0 90 > th dose independent rect. 9 1
994 334.22 atmosphere 995.0 30 > th dose independent rect. 11 7
997 334.22 radiation 30.0 270 > th dose independent rect. 15 18