BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0624800 Os12g0624800|AK103828
         (587 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0624800  Hypothetical protein                               1102   0.0  
Os11g0580000  Armadillo-like helical domain containing protein    199   4e-51

>Os12g0624800 Hypothetical protein
          Length = 587

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/587 (91%), Positives = 537/587 (91%)

Query: 1   MVMDPLTNKAAFSGLRQYVKELDSNTLPPFLARVCDPVKPCSFSEEEMLCIFETAAQAHG 60
           MVMDPLTNKAAFSGLRQYVKELDSNTLPPFLARVCDPVKPCSFSEEEMLCIFETAAQAHG
Sbjct: 1   MVMDPLTNKAAFSGLRQYVKELDSNTLPPFLARVCDPVKPCSFSEEEMLCIFETAAQAHG 60

Query: 61  RKIVPHIALIVSAIVRMMSSRNAVGCSKVVCALSRYVVDPLATEALKSAIIGSLCRPFAD 120
           RKIVPHIALIVSAIVRMMSSRNAVGCSKVVCALSRYVVDPLATEALKSAIIGSLCRPFAD
Sbjct: 61  RKIVPHIALIVSAIVRMMSSRNAVGCSKVVCALSRYVVDPLATEALKSAIIGSLCRPFAD 120

Query: 121 CLMSTKVESNSFGSALCVAALVQSNNWRFASNELVNDVCLKVSGALEEAHAQSIAHLNLV 180
           CLMSTKVESNSFGSALCVAALVQSNNWRFASNELVNDVCLKVSGALEEAHAQSIAHLNLV
Sbjct: 121 CLMSTKVESNSFGSALCVAALVQSNNWRFASNELVNDVCLKVSGALEEAHAQSIAHLNLV 180

Query: 181 VVLLTQNPLMLEPYGRSLIRSGLQILDESAKAXXXXXXXXXXXXXXXXXKGLDLGXXXXX 240
           VVLLTQNPLMLEPYGRSLIRSGLQILDESAKA                 KGLDLG     
Sbjct: 181 VVLLTQNPLMLEPYGRSLIRSGLQILDESAKASSSQMIISSIQMIHSIMKGLDLGIISSE 240

Query: 241 XXXXXHAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLSQLANYSVRNGRKG 300
                HAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLSQLANYSVRNGRKG
Sbjct: 241 ISSIIHAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLSQLANYSVRNGRKG 300

Query: 301 SYSHSLMDDADIRDDGSCDSHSCDLNSVHLSTDFDSQHSVGQCGSGSTRARRQLWCNKSD 360
           SYSHSLMDDADIRDDGSCDSHSCDLNSVHLSTDFDSQHSVGQCGSGSTRARRQLWCNKSD
Sbjct: 301 SYSHSLMDDADIRDDGSCDSHSCDLNSVHLSTDFDSQHSVGQCGSGSTRARRQLWCNKSD 360

Query: 361 KSHGMSNHDLFRTVIPDSHEASGLMAHFSSVDPIKPDRRLSDVPTRVAGPCYVCSAAHET 420
           KSHGMSNHDLFRTVIPDSHEASGLMAHFSSVDPIKPDRRLSDVPTRVAGPCYVCSAAHET
Sbjct: 361 KSHGMSNHDLFRTVIPDSHEASGLMAHFSSVDPIKPDRRLSDVPTRVAGPCYVCSAAHET 420

Query: 421 NHCSQISRAQVLSGDMRMNSTPRKQLHSCTFCRDPEQDGHPPLESPAIQHCSGPGTNILQ 480
           NHCSQISRAQVLSGDMRMNSTPRKQLHSCTFCRDPEQDGHPPLESPAIQHCSGPGTNILQ
Sbjct: 421 NHCSQISRAQVLSGDMRMNSTPRKQLHSCTFCRDPEQDGHPPLESPAIQHCSGPGTNILQ 480

Query: 481 FRKNSELKERKEFWDSIRQENQCHMQNTDALIEDLKFPAXXXXXXXXGAAKSPCQECQAV 540
           FRKNSELKERKEFWDSIRQENQCHMQNTDALIEDLKFPA        GAAKSPCQECQAV
Sbjct: 481 FRKNSELKERKEFWDSIRQENQCHMQNTDALIEDLKFPADDDDEDFDGAAKSPCQECQAV 540

Query: 541 NEKKTGGKKRNANRSHYPXXXXXXXXXXXXXXXPWWKDYKEPYVVPT 587
           NEKKTGGKKRNANRSHYP               PWWKDYKEPYVVPT
Sbjct: 541 NEKKTGGKKRNANRSHYPVFLFVFVVAIIALFFPWWKDYKEPYVVPT 587



>Os11g0580000 Armadillo-like helical domain containing protein
          Length = 622

 Score =  199 bits (507), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 190/367 (51%), Gaps = 15/367 (4%)

Query: 4   DPLTNKAAFSGLRQYVKELDSNTLPPFLARVCD-PVKPCSFSEEEMLCIFETAAQAHGRK 62
           D  + + A   L+ Y K LDS ++P FLA V D    P   S E  + ++E  A+ HGR 
Sbjct: 19  DADSRRNAMKALKSYAKHLDSKSIPHFLAEVSDNKAAPGLPSGEFTISLYEVLARVHGRN 78

Query: 63  IVPHIALIVSAIVRMMSSRNAV-----GCSKVVCALSRYVVDPLATEALKSAIIGSLCRP 117
           IVP +  I+S I+  +SS          CSKVV A++RY +DP   +  K+ II SLC+P
Sbjct: 79  IVPQVGNIMSTIMCTLSSSGGSFPLHQACSKVVPAIARYGIDPSTPDEEKAGIIASLCKP 138

Query: 118 FADCLMSTKVESNSFGSALCVAALVQSNNWRFASNELVNDVCLKVSGALEEAHAQSIAHL 177
               LM  + +  + G+ALC+ ALV+S+NWRFA+ E VN+VCLKV+GA+ +   QS AH+
Sbjct: 139 LCGALMGNQ-DGAASGAALCLKALVESSNWRFAAGETVNEVCLKVAGAMHDKSTQSNAHM 197

Query: 178 NLVVVLLTQNPLMLEPYGRSLIRSGLQILDESAKAXXXXXXXXXXXXXXXXXKGLDLGXX 237
            L + L+  N L+ E Y RSL+RS LQILD                      K +D    
Sbjct: 198 ALAMALVKHNGLIAEAYARSLVRSALQILDGDTAESSSQKRLSAIQMINFFMKFVDPRSI 257

Query: 238 XXXXXXXXHAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLSQLANYSVRNG 297
                     MEQ Q+D MP +  AAFEAS+TAK +   QK S H+ + S +   + +  
Sbjct: 258 SSELSKVVDIMEQCQNDRMPFVRGAAFEASQTAKSIAA-QKGSRHEVSTSPMVGSNFQRR 316

Query: 298 RKGSYSHSLMDDADIRDD----GSCDSHSCDLNSVHLSTDFDSQHSVGQCG---SGSTRA 350
           R+ S   SL +   +        S +SH  D + +  ST  +S  S+GQ       + R 
Sbjct: 317 REKSPCRSLWNAKGMAASPVQFQSPESHVVDSSIMCESTITESPVSIGQSSCNFDQNRRT 376

Query: 351 RRQLWCN 357
            R+LW N
Sbjct: 377 NRRLWSN 383



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,144,863
Number of extensions: 702550
Number of successful extensions: 1493
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 2
Length of query: 587
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 481
Effective length of database: 11,501,117
Effective search space: 5532037277
Effective search space used: 5532037277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)