FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0580000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0335) R2 : 0.0465
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.332 (0.0705) R2dN8 : 0.06 R2N8 : 0.0465
σ : 0.631
deviance : 182.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.39 0.604 3.04 -0.414 0.433 -0.466 -0.338 0.846 0.316 7.6 29.7 1245 -- --
165.43 0.599 3.02 -0.239 0.444 -0.386 -0.31 -- 0.309 7.58 29.6 1235 -- --
165.48 0.599 3.05 -0.44 0.446 -0.461 -- 0.915 0.277 7.4 29.5 1230 -- --
165.69 0.6 3.03 -0.241 0.436 -0.378 -- -- 0.309 7.42 29.58 1230 -- --
175.62 0.617 3.05 -0.392 -- -0.442 -- 0.727 0.308 -- 29.7 1267 -- --
172.34 0.615 3.03 -0.119 0.435 -- -0.215 -- 0.311 7.01 -- -- -- --
172.44 0.615 3.03 -0.124 0.436 -- -- -- 0.311 6.83 -- -- -- --
175.68 0.617 3.03 -0.227 -- -0.363 -- -- 0.335 -- 29.6 1256 -- --
167.14 0.602 3.02 -- 0.434 -0.338 -- -- 0.335 7.4 29.6 1230 -- --
182.37 0.631 3.03 -0.114 -- -- -- -- 0.32 -- -- -- -- --
172.84 0.615 3.02 -- 0.434 -- -- -- 0.325 6.85 -- -- -- --
177.01 0.62 3.03 -- -- -0.325 -- -- 0.354 -- 29.6 1267 -- --
182.72 0.631 3.03 -- -- -- -- -- 0.332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.67 temperature 20.0 90 > th dose dependent rect. 3 6
2 153.01 temperature 25.0 30 > th dose independent rect. 24 9
7 154.60 temperature 20.0 30 > th dose dependent rect. 24 9
22 156.01 temperature 25.0 30 > th dose independent rect. 6 3
63 158.18 temperature 20.0 720 > th dose dependent rect. 21 2
96 159.17 temperature 20.0 270 > th dose independent rect. 3 4
139 159.77 temperature 25.0 720 > th dose independent rect. 21 1
174 160.35 temperature 20.0 720 > th dose dependent rect. 19 10
187 160.54 temperature 25.0 10 > th dose independent rect. 18 16
207 160.75 wind 3.0 10 > th dose independent rect. 8 1
214 160.79 temperature 25.0 30 > th dose independent sin 8 NA
223 160.92 temperature 20.0 270 > th dose independent rect. 24 7
228 160.95 atmosphere 1005.0 30 > th dose dependent rect. 6 3
241 161.05 wind 9.0 43200 > th dose independent rect. 15 21
255 161.14 wind 9.0 43200 > th dose dependent rect. 9 9
262 161.22 wind 1.0 10 > th dose dependent rect. 8 1
264 161.23 atmosphere 1005.0 30 > th dose independent rect. 4 5
267 161.24 wind 9.0 43200 < th dose independent rect. 15 21
269 161.26 radiation 10.0 10 > th dose independent rect. 8 1
289 161.35 wind 9.0 43200 > th dose independent rect. 21 17
301 161.40 wind 9.0 43200 > th dose dependent rect. 9 21
303 161.41 temperature 30.0 720 < th dose dependent rect. 18 9
309 161.43 wind 9.0 43200 > th dose dependent rect. 9 13
313 161.44 wind 9.0 43200 > th dose dependent rect. 9 18
318 161.46 wind 9.0 43200 > th dose dependent rect. 9 15
319 161.47 temperature 25.0 10 > th dose independent rect. 8 1
320 161.47 radiation 1.0 720 < th dose independent rect. 9 1
321 161.47 radiation 1.0 720 < th dose dependent rect. 9 1
324 161.48 temperature 20.0 10 > th dose dependent rect. 8 1
328 161.49 wind 9.0 43200 > th dose dependent sin 21 NA
332 161.50 temperature 25.0 30 < th dose independent sin 8 NA
336 161.50 wind 7.0 43200 > th dose dependent rect. 15 20
339 161.53 wind 9.0 43200 < th dose independent rect. 21 17
344 161.54 wind 9.0 43200 > th dose dependent rect. 10 4
373 161.69 wind 9.0 43200 > th dose independent rect. 8 5
380 161.70 wind 9.0 43200 > th dose dependent rect. 21 21
381 161.71 wind 9.0 43200 > th dose independent sin 5 NA
383 161.71 humidity 90.0 30 < th dose independent rect. 8 1
384 161.71 radiation 40.0 30 < th dose independent rect. 8 1
390 161.73 atmosphere 1005.0 30 > th dose independent rect. 8 1
396 161.74 atmosphere 1000.0 43200 < th dose dependent rect. 11 2
411 161.76 humidity 70.0 30 > th dose independent rect. 8 1
413 161.76 wind 9.0 43200 > th dose dependent rect. 1 17
422 161.78 wind 9.0 43200 > th dose independent rect. 1 13
423 161.78 atmosphere 995.0 43200 < th dose dependent rect. 10 15
433 161.79 wind 9.0 43200 > th dose dependent rect. 4 14
435 161.79 wind 9.0 43200 > th dose dependent rect. 1 21
439 161.80 precipitation 0.1 43200 > th dose independent rect. 19 13
454 161.81 wind 9.0 43200 > th dose dependent rect. 15 23
458 161.82 wind 9.0 43200 > th dose dependent rect. 4 18
464 161.83 precipitation 0.1 43200 < th dose independent rect. 19 13
466 161.83 wind 9.0 43200 > th dose independent rect. 18 19
468 161.83 radiation 40.0 30 < th dose dependent rect. 8 1
469 161.83 precipitation 0.1 43200 < th dose dependent rect. 19 13
479 161.84 wind 9.0 43200 > th dose dependent no NA NA
495 161.85 atmosphere 995.0 43200 < th dose dependent rect. 11 13
502 161.86 wind 9.0 43200 < th dose independent sin 5 NA
504 161.86 wind 9.0 43200 > th dose independent rect. 6 8
506 161.86 atmosphere 1000.0 30 > th dose dependent rect. 8 1
515 161.87 wind 7.0 30 < th dose independent rect. 8 1
517 161.87 temperature 10.0 30 > th dose independent rect. 8 1
519 161.87 temperature 30.0 30 < th dose independent rect. 8 1
520 161.87 humidity 50.0 30 > th dose independent rect. 8 1
522 161.87 atmosphere 995.0 30 > th dose independent rect. 8 1
523 161.87 atmosphere 1010.0 30 < th dose independent rect. 8 1
526 161.87 precipitation 0.1 30 < th dose independent rect. 8 1
528 161.87 temperature 10.0 30 > th dose independent rect. 9 23
530 161.87 precipitation 0.1 30 < th dose dependent rect. 8 1
562 161.90 humidity 50.0 30 > th dose dependent rect. 8 1
583 161.92 atmosphere 995.0 43200 < th dose dependent sin 19 NA
594 161.93 precipitation 0.1 43200 > th dose independent rect. 21 11
640 161.98 precipitation 0.1 43200 < th dose independent rect. 21 11
644 161.98 precipitation 0.1 43200 < th dose dependent rect. 21 11
652 161.99 temperature 10.0 1440 > th dose independent rect. 9 1
655 161.99 atmosphere 995.0 1440 > th dose independent rect. 9 1
658 161.99 atmosphere 1015.0 1440 < th dose independent rect. 9 1
661 161.99 temperature 10.0 1440 > th dose independent rect. 10 23
669 162.00 atmosphere 995.0 43200 < th dose independent rect. 4 11
672 162.00 humidity 90.0 30 < th dose dependent rect. 8 1
677 162.01 wind 9.0 43200 < th dose independent rect. 1 13
679 162.01 wind 9.0 10 < th dose independent rect. 9 23
690 162.03 wind 9.0 43200 < th dose independent rect. 18 19
703 162.04 wind 9.0 30 < th dose dependent rect. 8 1
707 162.04 precipitation 0.1 43200 > th dose dependent rect. 19 13
710 162.05 atmosphere 995.0 43200 > th dose independent rect. 4 11
712 162.05 atmosphere 1015.0 30 < th dose dependent rect. 8 1
717 162.06 radiation 1.0 30 > th dose dependent rect. 8 1
722 162.07 wind 9.0 43200 < th dose independent rect. 9 3
727 162.07 wind 9.0 43200 > th dose dependent rect. 13 23
728 162.08 wind 9.0 43200 < th dose independent rect. 4 10
735 162.09 wind 9.0 43200 < th dose independent rect. 7 6
736 162.09 wind 9.0 43200 < th dose independent rect. 6 8
745 162.10 atmosphere 995.0 43200 < th dose independent rect. 10 14
747 162.10 atmosphere 995.0 43200 < th dose independent rect. 8 17
748 162.10 humidity 80.0 720 < th dose dependent rect. 19 1
753 162.11 atmosphere 995.0 43200 > th dose independent rect. 10 14
755 162.11 atmosphere 995.0 43200 > th dose independent rect. 8 17
756 162.11 atmosphere 995.0 43200 > th dose independent rect. 4 19
757 162.11 wind 9.0 43200 > th dose independent rect. 21 20
777 162.13 precipitation 0.1 43200 > th dose dependent sin 7 NA
781 162.13 wind 7.0 43200 > th dose dependent rect. 21 17
782 162.13 atmosphere 995.0 43200 < th dose dependent rect. 5 20
786 162.14 atmosphere 995.0 43200 < th dose independent rect. 2 15
789 162.14 wind 7.0 43200 > th dose dependent sin 5 NA
796 162.15 atmosphere 995.0 43200 > th dose independent rect. 2 16
809 162.15 atmosphere 1000.0 30 > th dose dependent rect. 4 5
811 162.15 atmosphere 995.0 43200 < th dose dependent rect. 3 20
814 162.16 atmosphere 995.0 43200 > th dose independent rect. 3 13
826 162.17 precipitation 0.1 43200 > th dose independent sin 8 NA
829 162.17 atmosphere 995.0 43200 < th dose independent rect. 3 13
846 162.19 atmosphere 995.0 43200 > th dose independent sin 2 NA
847 162.19 atmosphere 995.0 43200 < th dose independent sin 3 NA
848 162.19 precipitation 0.1 43200 < th dose independent sin 8 NA
855 162.19 precipitation 0.1 43200 < th dose dependent sin 8 NA
857 162.19 precipitation 0.1 43200 > th dose dependent rect. 21 11
882 162.22 temperature 20.0 10 > th dose dependent rect. 17 17
890 162.23 precipitation 0.1 43200 > th dose dependent rect. 2 13
892 162.23 precipitation 0.1 43200 > th dose dependent rect. 22 16
906 162.25 wind 9.0 43200 > th dose independent rect. 21 22
913 162.26 atmosphere 995.0 43200 < th dose independent sin 19 NA
925 162.27 atmosphere 995.0 43200 > th dose independent sin 19 NA
946 162.29 precipitation 0.1 43200 > th dose dependent sin 4 NA
947 162.29 precipitation 0.1 43200 > th dose dependent rect. 22 9
953 162.30 wind 9.0 43200 < th dose independent sin 10 NA
955 162.30 wind 1.0 90 < th dose independent rect. 1 4
964 162.30 atmosphere 995.0 43200 < th dose dependent rect. 2 17
985 162.32 precipitation 0.1 43200 > th dose independent rect. 22 9