BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0580000 Os11g0580000|AK119421
(622 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0580000 Armadillo-like helical domain containing protein 1176 0.0
Os12g0624800 Hypothetical protein 204 2e-52
>Os11g0580000 Armadillo-like helical domain containing protein
Length = 622
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/622 (92%), Positives = 577/622 (92%)
Query: 1 MGRSLSPLLRQELDNLDKDADSRRNAMKALKSYAKHLDSKSIPHFLAEVSDNKAAPGLPS 60
MGRSLSPLLRQELDNLDKDADSRRNAMKALKSYAKHLDSKSIPHFLAEVSDNKAAPGLPS
Sbjct: 1 MGRSLSPLLRQELDNLDKDADSRRNAMKALKSYAKHLDSKSIPHFLAEVSDNKAAPGLPS 60
Query: 61 GEFTISLYEVLARVHGRNIVPQVGNIMSTIMCTLSSSGGSFPLHQACSKVVPAIARYGID 120
GEFTISLYEVLARVHGRNIVPQVGNIMSTIMCTLSSSGGSFPLHQACSKVVPAIARYGID
Sbjct: 61 GEFTISLYEVLARVHGRNIVPQVGNIMSTIMCTLSSSGGSFPLHQACSKVVPAIARYGID 120
Query: 121 PSTPDEEKAGIIASLCKPLCGALMGNQDGAASGAALCLKALVESSNWRFAAGETVNEVCL 180
PSTPDEEKAGIIASLCKPLCGALMGNQDGAASGAALCLKALVESSNWRFAAGETVNEVCL
Sbjct: 121 PSTPDEEKAGIIASLCKPLCGALMGNQDGAASGAALCLKALVESSNWRFAAGETVNEVCL 180
Query: 181 KVAGAMHDKSTQSNAHMALAMALVKHNGLIAEAYARSLVRSALQILDGDTAESSSQKRLS 240
KVAGAMHDKSTQSNAHMALAMALVKHNGLIAEAYARSLVRSALQILDGDTAESSSQKRLS
Sbjct: 181 KVAGAMHDKSTQSNAHMALAMALVKHNGLIAEAYARSLVRSALQILDGDTAESSSQKRLS 240
Query: 241 AIQMINFFMKFVDPRSISSELSKVVDIMEQCQNDRMPFVRGAAFEASQTAKSIAAQKGSR 300
AIQMINFFMKFVDPRSISSELSKVVDIMEQCQNDRMPFVRGAAFEASQTAKSIAAQKGSR
Sbjct: 241 AIQMINFFMKFVDPRSISSELSKVVDIMEQCQNDRMPFVRGAAFEASQTAKSIAAQKGSR 300
Query: 301 HEVSTSPMVGSNFQRRREKSPCRSLWNAKGMAASPVQFQSPESHVVDSSIMCESTITESP 360
HEVSTSPMVGSNFQRRREKSPCRSLWNAKGMAASPVQFQSPESHVVDSSIMCESTITESP
Sbjct: 301 HEVSTSPMVGSNFQRRREKSPCRSLWNAKGMAASPVQFQSPESHVVDSSIMCESTITESP 360
Query: 361 VSIGQSSCNFDQNRRTNRRLWSNDGVDVSLKDGLFFRLCSDGKYLEDDLDEVCDSEVTDT 420
VSIGQSSCNFDQNRRTNRRLWSNDGVDVSLKDGLFFRLCSDGKYLEDDLDEVCDSEVTDT
Sbjct: 361 VSIGQSSCNFDQNRRTNRRLWSNDGVDVSLKDGLFFRLCSDGKYLEDDLDEVCDSEVTDT 420
Query: 421 NFECTNSFSGFVSASPNGATSRDKTPSPQASERPISIDDVKIYTTPRKLLRSLQSSYDFD 480
NFECTNSFSGFVSASPNGATSRDKTPSPQASERPISIDDVKIYTTPRKLLRSLQSSYDFD
Sbjct: 421 NFECTNSFSGFVSASPNGATSRDKTPSPQASERPISIDDVKIYTTPRKLLRSLQSSYDFD 480
Query: 481 SARNEERSIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXKIEEAKYDNETIDAQSADDTT 540
SARNEERSIAKL KIEEAKYDNETIDAQSADDTT
Sbjct: 481 SARNEERSIAKLNSSSSPSEESNELEESSEEMQSQLSDSKIEEAKYDNETIDAQSADDTT 540
Query: 541 QILSNEDKSVLCTPEVEDASCKASSEGECKEQDICVTRSMGKSRKYKAVFSFXXXXXXXX 600
QILSNEDKSVLCTPEVEDASCKASSEGECKEQDICVTRSMGKSRKYKAVFSF
Sbjct: 541 QILSNEDKSVLCTPEVEDASCKASSEGECKEQDICVTRSMGKSRKYKAVFSFLLSIVMIV 600
Query: 601 XXXXXXXXXXESYDDYVGLVPT 622
ESYDDYVGLVPT
Sbjct: 601 LAIIAVLIRIESYDDYVGLVPT 622
>Os12g0624800 Hypothetical protein
Length = 587
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 211/367 (57%), Gaps = 15/367 (4%)
Query: 19 DADSRRNAMKALKSYAKHLDSKSIPHFLAEVSDNKAAPGLPSGEFTISLYEVLARVHGRN 78
D + + A L+ Y K LDS ++P FLA V D P S E + ++E A+ HGR
Sbjct: 4 DPLTNKAAFSGLRQYVKELDSNTLPPFLARVCD-PVKPCSFSEEEMLCIFETAAQAHGRK 62
Query: 79 IVPQVGNIMSTIMCTLSSSGGSFPLHQACSKVVPAIARYGIDPSTPDEEKAGIIASLCKP 138
IVP + I+S I+ +SS CSKVV A++RY +DP + K+ II SLC+P
Sbjct: 63 IVPHIALIVSAIVRMMSSRNAV-----GCSKVVCALSRYVVDPLATEALKSAIIGSLCRP 117
Query: 139 LCGALMGNQ-DGAASGAALCLKALVESSNWRFAAGETVNEVCLKVAGAMHDKSTQSNAHM 197
LM + + + G+ALC+ ALV+S+NWRFA+ E VN+VCLKV+GA+ + QS AH+
Sbjct: 118 FADCLMSTKVESNSFGSALCVAALVQSNNWRFASNELVNDVCLKVSGALEEAHAQSIAHL 177
Query: 198 ALAMALVKHNGLIAEAYARSLVRSALQILDGDTAESSSQKRLSAIQMINFFMKFVDPRSI 257
L + L+ N L+ E Y RSL+RS LQILD SSSQ +S+IQMI+ MK +D I
Sbjct: 178 NLVVVLLTQNPLMLEPYGRSLIRSGLQILDESAKASSSQMIISSIQMIHSIMKGLDLGII 237
Query: 258 SSELSKVVDIMEQCQNDRMPFVRGAAFEASQTAKSIAA-QKGSRHEVSTSPMVGSNFQRR 316
SSE+S ++ MEQ Q+D MP + AAFEAS+TAK + QK S H+ + S + + +
Sbjct: 238 SSEISSIIHAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLSQLANYSVRNG 297
Query: 317 REKSPCRSLWNAKGMAASPVQFQSPESHVVDSSIMCESTITESPVSIGQSSCNFDQNRRT 376
R+ S SL + + S +SH D + + ST +S S+GQ + R
Sbjct: 298 RKGSYSHSLMDDADIRDD----GSCDSHSCDLNSVHLSTDFDSQHSVGQCG---SGSTRA 350
Query: 377 NRRLWSN 383
R+LW N
Sbjct: 351 RRQLWCN 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,033,039
Number of extensions: 759454
Number of successful extensions: 1787
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1782
Number of HSP's successfully gapped: 2
Length of query: 622
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 515
Effective length of database: 11,448,903
Effective search space: 5896185045
Effective search space used: 5896185045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)