BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0615500 Os12g0615500|AK100235
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0615500  Conserved hypothetical protein                      530   e-151
Os03g0642900  Conserved hypothetical protein                      332   3e-91
Os03g0643250  Conserved hypothetical protein                      327   7e-90
Os03g0643000                                                      131   5e-31
Os09g0363800  Beta-lactamase-like domain containing protein       115   4e-26

>Os12g0615500 Conserved hypothetical protein
          Length = 284

 Score =  530 bits (1365), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/284 (91%), Positives = 260/284 (91%)

Query: 1   MASSVPNXXXXXXXXXXXXXXXXXXXXXXXXLVFLGTGCSSAVPNARCLIQPPDPPCAVC 60
           MASSVPN                        LVFLGTGCSSAVPNARCLIQPPDPPCAVC
Sbjct: 1   MASSVPNGHGAATATGEGGTPPPPPPSSSSSLVFLGTGCSSAVPNARCLIQPPDPPCAVC 60

Query: 61  SQSLSVAPELNPNYRCNTSLLIDYCQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDS 120
           SQSLSVAPELNPNYRCNTSLLIDYCQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDS
Sbjct: 61  SQSLSVAPELNPNYRCNTSLLIDYCQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDS 120

Query: 121 IILTHEHADAILGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGE 180
           IILTHEHADAILGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGE
Sbjct: 121 IILTHEHADAILGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGE 180

Query: 181 EVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYICLGFLFGRKSKVAYISDVSW 240
           EVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYICLGFLFGRKSKVAYISDVSW
Sbjct: 181 EVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYICLGFLFGRKSKVAYISDVSW 240

Query: 241 FPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMHRCPL 284
           FPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMHRCPL
Sbjct: 241 FPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMHRCPL 284



>Os03g0642900 Conserved hypothetical protein
          Length = 240

 Score =  332 bits (850), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 186/221 (84%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAH 91
           ++FLGTGCS A+P+ RCL++P  PPCAVCS  +S+ PE NPNYRCNTSLLIDYCQD+  H
Sbjct: 19  VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH 78

Query: 92  KYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEP 151
           +YI+IDVGKTFREQVLRWFVHHKIP V+SIILTHEHADA+LGLDDV +VQ    +ND   
Sbjct: 79  EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR 138

Query: 152 TPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPL 211
            PI+L+QF MDS+  +FPYL++ KL+EG+EV +VAQLDWR+IE D+  PFV+SGLEFVPL
Sbjct: 139 VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL 198

Query: 212 PVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGHILY 252
           PV+HGE  ICLGFLFGRK+K+AY+SDVS F P TE+G + Y
Sbjct: 199 PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYGCLDY 239



>Os03g0643250 Conserved hypothetical protein
          Length = 553

 Score =  327 bits (837), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 179/218 (82%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAH 91
           ++FLGTGCS A+P+ARCLI P  PPC VCS SLS+ PE NPNYRCNTSLLIDYCQ +  H
Sbjct: 7   VIFLGTGCSGALPDARCLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66

Query: 92  KYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEP 151
           KYILIDVGKTFREQVLRWF HHKIP VDSIILTHEHADA+LGLDDV +VQ     N +  
Sbjct: 67  KYILIDVGKTFREQVLRWFSHHKIPYVDSIILTHEHADAVLGLDDVWVVQPSGCRNGLGK 126

Query: 152 TPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPL 211
            PI+L+ F M+S+A +FPYL++ KL+EG+E  +V QLDW +IE D+  PFV+SGLEFVPL
Sbjct: 127 VPIFLTHFTMNSVAARFPYLLKNKLEEGDEGSQVIQLDWTIIEGDIDKPFVSSGLEFVPL 186

Query: 212 PVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGH 249
           PV+HGEDY+CLGFLFGR+S++AY+SDVS   P TEHG 
Sbjct: 187 PVMHGEDYVCLGFLFGRRSRIAYLSDVSRILPRTEHGR 224



>Os03g0643000 
          Length = 153

 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 87/121 (71%), Gaps = 5/121 (4%)

Query: 161 MDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYI 220
           M+ IA +FPYLV+ KL+EG+E  +VAQLDWR+IE D++ PF++SGLEFVPLPV+HGE Y+
Sbjct: 1   MEPIA-RFPYLVKYKLEEGDEASQVAQLDWRIIEGDIEKPFISSGLEFVPLPVMHGEGYV 59

Query: 221 CLGFLFGRKSKVAYISDVSWFPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMH 280
           CLGFLFGRK+++AY+SD+  F P TEH     S        +L+L  NS L G  L  + 
Sbjct: 60  CLGFLFGRKARIAYLSDILRFLPKTEHA---ISKSGAGQLDLLILEANS-LHGEALDAVK 115

Query: 281 R 281
           R
Sbjct: 116 R 116



>Os09g0363800 Beta-lactamase-like domain containing protein
          Length = 377

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 19/205 (9%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPD-----PPCAVCSQSL--SVAPELNPNYRCNTSLLIDY 84
           L+FLGTG S  +P   CL  P       PP ++  + +    A   N N R NTS+L+ +
Sbjct: 99  LIFLGTGTSEGIPRVSCLTNPSKTCTVRPPSSLQQRDVCTKAAEPGNRNRRRNTSILLRH 158

Query: 85  CQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFS 144
                    ILID GK F    L+WF  + +  +D++I+TH HADAI GLD +R      
Sbjct: 159 ATPSGTAN-ILIDAGKFFYHSALQWFPAYGLRTIDAVIITHSHADAIGGLDCLR-----D 212

Query: 145 PTNDIEPT-PIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVT 203
            TN+++PT PIY+++   + +     YL+   +        V+ L + +I+ +   PF  
Sbjct: 213 WTNNVQPTIPIYVAERDYEVMKMTHYYLIDTSVVIPGAA--VSALQFNIIKEE---PFTV 267

Query: 204 SGLEFVPLPVIHGEDYICLGFLFGR 228
             LE +PLPV HG+ Y  LGF FGR
Sbjct: 268 HNLEVIPLPVWHGQGYRSLGFRFGR 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,811,512
Number of extensions: 412859
Number of successful extensions: 1091
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 5
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)