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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0642900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0298) R2 : 0.0292
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.232 (0.0627) R2dN8 : 0.0378 R2N8 : 0.0292
σ : 0.561
deviance : 144.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.18 0.526 3.08 -0.413 0.216 0.498 0.747 -0.0398 0.213 12.3 0.2921 88 -- --
125.18 0.521 3.09 -0.41 0.218 0.499 0.752 -- 0.211 12.3 0.2998 87 -- --
126.31 0.523 3.1 -0.304 0.161 0.422 -- -0.384 0.22 11.8 0.2908 94 -- --
127.88 0.527 3.09 -0.398 0.21 0.499 -- -- 0.208 12.5 0.3 86 -- --
125.83 0.522 3.09 -0.38 -- 0.337 -- -0.635 0.205 -- 0.2941 86 -- --
128.94 0.532 3.1 -0.445 0.367 -- -0.762 -- 0.178 0.317 -- -- -- --
131.43 0.537 3.1 -0.416 0.37 -- -- -- 0.181 0.472 -- -- -- --
128.23 0.527 3.09 -0.388 -- 0.342 -- -- 0.205 -- 0.29 83 -- --
131.89 0.535 3.08 -- 0.196 0.495 -- -- 0.223 12.4 0.2404 83 -- --
140.01 0.553 3.09 -0.403 -- -- -- -- 0.188 -- -- -- -- --
135.99 0.546 3.09 -- 0.363 -- -- -- 0.228 0.415 -- -- -- --
132.34 0.536 3.08 -- -- 0.343 -- -- 0.248 -- 0.2458 83 -- --
144.3 0.561 3.08 -- -- -- -- -- 0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.43 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 122.46 atmosphere 1005.0 10 > th dose dependent rect. 2 1
5 122.54 atmosphere 1005.0 270 > th dose dependent rect. 23 4
6 122.57 atmosphere 1015.0 30 < th dose independent rect. 3 23
7 122.57 temperature 20.0 30 > th dose dependent rect. 2 1
8 122.58 atmosphere 1005.0 270 > th dose dependent rect. 24 2
9 122.59 wind 3.0 30 < th dose independent rect. 2 1
12 122.63 temperature 20.0 30 > th dose independent rect. 2 1
16 122.67 wind 3.0 30 < th dose dependent rect. 2 1
17 122.70 temperature 25.0 30 < th dose independent rect. 2 1
18 122.70 atmosphere 1015.0 30 < th dose independent rect. 16 10
19 122.71 wind 9.0 30 < th dose independent rect. 2 1
20 122.71 temperature 10.0 30 > th dose independent rect. 2 1
23 122.71 humidity 50.0 30 > th dose independent rect. 2 1
26 122.71 atmosphere 995.0 30 > th dose independent rect. 2 1
27 122.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 122.71 radiation 1.0 30 < th dose independent rect. 2 1
34 122.71 precipitation 0.1 30 < th dose independent rect. 2 1
35 122.71 temperature 10.0 30 > th dose independent rect. 3 23
37 122.71 radiation 1.0 30 < th dose dependent rect. 2 1
42 122.71 precipitation 0.1 30 < th dose dependent rect. 2 1
49 122.80 humidity 50.0 30 > th dose dependent rect. 2 1
50 122.81 temperature 20.0 30 > th dose dependent rect. 2 3
56 122.85 temperature 20.0 270 > th dose dependent rect. 24 2
60 122.90 atmosphere 1015.0 30 < th dose dependent rect. 2 1
61 122.94 temperature 20.0 270 > th dose dependent rect. 23 4
66 123.04 temperature 30.0 30 < th dose dependent rect. 2 1
69 123.06 wind 1.0 30 > th dose independent rect. 2 1
79 123.22 temperature 25.0 270 > th dose independent rect. 24 2
90 123.40 radiation 1.0 14400 < th dose dependent rect. 3 1
120 123.45 wind 9.0 1440 < th dose independent rect. 3 1
121 123.45 temperature 10.0 1440 > th dose independent rect. 3 1
124 123.45 temperature 30.0 1440 < th dose independent rect. 3 1
128 123.45 humidity 50.0 1440 > th dose independent rect. 3 1
137 123.45 atmosphere 995.0 1440 > th dose independent rect. 3 1
138 123.45 radiation 1.0 1440 < th dose independent rect. 3 1
158 123.45 temperature 10.0 1440 > th dose independent rect. 4 23
161 123.45 radiation 1.0 1440 < th dose dependent rect. 3 1
188 123.60 wind 9.0 30 < th dose independent rect. 3 23
197 123.67 atmosphere 1005.0 10 > th dose dependent rect. 24 5
198 123.68 atmosphere 995.0 30 > th dose independent rect. 3 23
212 123.82 atmosphere 1005.0 90 > th dose independent rect. 24 5
232 124.00 wind 3.0 30 < th dose dependent rect. 2 3
233 124.01 temperature 25.0 30 > th dose independent rect. 4 1
235 124.02 atmosphere 1005.0 30 > th dose dependent rect. 4 1
237 124.04 humidity 90.0 270 < th dose independent rect. 22 4
240 124.06 humidity 90.0 10 < th dose independent rect. 4 1
243 124.07 temperature 15.0 90 > th dose dependent rect. 21 8
244 124.08 wind 1.0 30 > th dose independent rect. 16 15
247 124.10 temperature 20.0 90 < th dose independent rect. 6 1
253 124.14 wind 1.0 30 > th dose dependent rect. 4 1
261 124.20 wind 1.0 30 > th dose independent rect. 4 1
262 124.20 atmosphere 1005.0 270 > th dose independent rect. 24 2
264 124.21 atmosphere 1015.0 10 < th dose independent rect. 16 22
273 124.29 precipitation 0.1 30 < th dose independent rect. 3 23
274 124.29 temperature 20.0 30 < th dose dependent rect. 7 1
277 124.29 precipitation 0.1 30 < th dose dependent rect. 3 23
279 124.31 atmosphere 1015.0 30 < th dose independent rect. 16 15
283 124.34 temperature 15.0 30 > th dose dependent rect. 19 10
284 124.35 atmosphere 1005.0 30 > th dose independent rect. 2 3
290 124.38 atmosphere 1015.0 30 < th dose independent rect. 5 21
301 124.44 atmosphere 1005.0 30 > th dose dependent rect. 16 6
302 124.44 radiation 1.0 90 < th dose dependent rect. 6 23
313 124.48 temperature 25.0 90 > th dose dependent rect. 4 1
318 124.52 humidity 90.0 720 > th dose independent rect. 12 1
319 124.52 radiation 1.0 720 < th dose independent rect. 12 1
321 124.52 humidity 90.0 720 > th dose dependent rect. 12 1
322 124.52 radiation 1.0 720 < th dose dependent rect. 12 1
342 124.58 precipitation 0.1 10 < th dose independent rect. 2 14
344 124.58 precipitation 0.1 10 < th dose dependent rect. 2 14
345 124.58 radiation 1.0 90 < th dose dependent rect. 21 23
367 124.64 radiation 30.0 10 < th dose independent rect. 16 10
374 124.67 temperature 15.0 30 > th dose independent rect. 5 23
378 124.68 atmosphere 1000.0 30 > th dose independent rect. 2 14
386 124.71 atmosphere 1015.0 1440 < th dose independent rect. 3 1
387 124.71 precipitation 0.1 30 < th dose independent rect. 16 10
390 124.71 precipitation 0.1 30 < th dose dependent rect. 16 10
393 124.72 wind 9.0 30 < th dose independent rect. 16 10
397 124.73 temperature 10.0 30 > th dose independent rect. 16 10
399 124.73 temperature 10.0 30 > th dose independent rect. 2 14
401 124.73 atmosphere 1015.0 30 < th dose independent rect. 2 14
407 124.75 temperature 20.0 30 > th dose independent rect. 21 8
415 124.78 humidity 50.0 10 > th dose independent rect. 2 14
419 124.79 radiation 20.0 4320 < th dose independent rect. 3 3
430 124.81 atmosphere 995.0 30 > th dose independent rect. 16 10
435 124.83 temperature 20.0 30 > th dose independent rect. 24 5
437 124.83 temperature 10.0 1440 > th dose independent rect. 17 10
440 124.83 radiation 30.0 1440 < th dose independent rect. 17 10
446 124.83 temperature 10.0 1440 > th dose independent rect. 3 14
449 124.83 wind 1.0 10 > th dose independent rect. 16 22
479 124.92 radiation 1.0 30 < th dose dependent rect. 7 1
486 124.93 radiation 1.0 90 < th dose independent rect. 6 23
512 125.01 radiation 20.0 4320 < th dose independent rect. 20 10
515 125.01 wind 3.0 30 < th dose dependent rect. 14 15
517 125.02 wind 9.0 30 < th dose independent rect. 2 14
528 125.07 radiation 1.0 90 > th dose independent rect. 16 22
529 125.07 radiation 40.0 10 < th dose dependent rect. 16 10
537 125.10 temperature 20.0 30 > th dose independent rect. 19 10
542 125.11 temperature 20.0 30 > th dose independent rect. 13 16
545 125.13 atmosphere 1005.0 270 > th dose independent rect. 15 6
554 125.17 wind 3.0 30 < th dose independent rect. 2 3
555 125.17 wind 1.0 30 > th dose independent rect. 16 10
561 125.18 atmosphere 1005.0 10 > th dose independent rect. 16 8
563 125.19 temperature 30.0 30 < th dose independent rect. 2 14
564 125.19 radiation 1.0 90 < th dose dependent rect. 14 15
580 125.23 temperature 30.0 30 < th dose dependent rect. 16 15
610 125.29 temperature 20.0 720 < th dose independent rect. 17 1
616 125.30 temperature 30.0 30 < th dose independent rect. 16 10
620 125.31 humidity 50.0 30 > th dose independent rect. 16 10
632 125.34 atmosphere 1015.0 1440 < th dose independent rect. 3 3
635 125.34 wind 7.0 720 > th dose dependent rect. 14 2
641 125.35 wind 3.0 30 < th dose dependent rect. 10 19
659 125.39 wind 3.0 30 < th dose independent rect. 14 15
664 125.40 radiation 1.0 90 < th dose independent rect. 14 15
665 125.40 temperature 25.0 1440 > th dose dependent rect. 22 2
666 125.40 atmosphere 1005.0 270 > th dose dependent rect. 16 3
669 125.40 radiation 1.0 90 < th dose dependent rect. 6 10
677 125.41 atmosphere 1015.0 30 < th dose independent rect. 5 23
690 125.43 atmosphere 1000.0 30 > th dose independent rect. 16 15
700 125.45 radiation 1.0 90 < th dose independent rect. 21 23
711 125.47 temperature 15.0 30 > th dose independent rect. 7 22
712 125.47 atmosphere 1015.0 270 < th dose independent rect. 1 23
741 125.50 atmosphere 1015.0 270 < th dose independent rect. 13 23
751 125.51 radiation 1.0 90 < th dose dependent rect. 14 18
759 125.52 wind 3.0 30 < th dose dependent rect. 24 5
762 125.53 wind 7.0 90 < th dose independent rect. 5 12
769 125.53 wind 9.0 90 < th dose dependent rect. 17 12
779 125.55 radiation 20.0 4320 < th dose independent rect. 1 5
804 125.59 humidity 80.0 30 > th dose independent rect. 2 3
817 125.60 wind 7.0 720 < th dose independent rect. 17 2
819 125.60 precipitation 0.1 30 < th dose independent rect. 2 3
822 125.60 humidity 90.0 270 < th dose dependent rect. 22 3
823 125.60 precipitation 0.1 30 < th dose dependent rect. 2 3
829 125.60 radiation 1.0 30 < th dose dependent rect. 19 23
838 125.62 wind 5.0 720 < th dose independent rect. 5 2
843 125.62 temperature 30.0 30 < th dose independent rect. 3 23
846 125.63 wind 9.0 1440 < th dose independent rect. 3 3
847 125.63 temperature 10.0 1440 > th dose independent rect. 3 3
850 125.63 temperature 30.0 1440 < th dose independent rect. 3 3
854 125.63 humidity 50.0 1440 > th dose independent rect. 3 3
863 125.63 atmosphere 995.0 1440 > th dose independent rect. 3 3
877 125.63 temperature 10.0 1440 > th dose independent rect. 8 9
881 125.63 temperature 10.0 1440 > th dose independent rect. 17 15
884 125.63 wind 9.0 30 < th dose independent rect. 5 21
885 125.63 temperature 10.0 1440 > th dose independent rect. 6 21
897 125.64 wind 7.0 30 < th dose independent rect. 16 15
914 125.66 wind 7.0 720 > th dose independent rect. 13 3
918 125.66 wind 1.0 10 > th dose independent rect. 16 12
919 125.66 radiation 1.0 90 < th dose dependent no NA NA
930 125.68 temperature 20.0 10 > th dose independent rect. 24 16
936 125.68 radiation 1.0 30 < th dose dependent rect. 2 15
940 125.69 atmosphere 1015.0 30 < th dose independent rect. 5 19
950 125.70 humidity 50.0 10 > th dose independent rect. 7 9
951 125.70 atmosphere 1000.0 10 > th dose independent rect. 16 22
959 125.70 temperature 10.0 30 > th dose dependent rect. 14 15
963 125.71 radiation 20.0 30 < th dose independent rect. 16 15
978 125.72 temperature 25.0 90 < th dose dependent rect. 20 10
982 125.73 precipitation 0.1 90 < th dose independent rect. 5 12
983 125.73 humidity 60.0 30 > th dose independent rect. 16 15
984 125.73 precipitation 0.1 30 < th dose independent rect. 5 21
989 125.73 precipitation 0.1 90 < th dose dependent rect. 5 12
991 125.73 precipitation 0.1 30 < th dose dependent rect. 5 21
998 125.74 radiation 1.0 90 < th dose dependent rect. 17 23
999 125.75 temperature 25.0 1440 > th dose independent rect. 23 1